Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HOXC9P31274 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
HOXC9P31274 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC7.1□□□□□ -1.27
HOXC9P31274 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
HOXC9P31274 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
HOXC9P31274 XKRY2-202ENST00000623874 1581 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 XKRY-202ENST00000624960 1581 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
HOXC9P31274 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 RN7SKP103-201ENST00000363848 320 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 SNORD56.6-201ENST00000384569 71 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.09□□□□□ -1.27
HOXC9P31274 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC7.09□□□□□ -1.27
HOXC9P31274 IGHVII-44-2-201ENST00000517728 250 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 BRD9P1-201ENST00000529855 560 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC7.09□□□□□ -1.27
HOXC9P31274 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC7.09□□□□□ -1.27
HOXC9P31274 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.09□□□□□ -1.27
HOXC9P31274 AL353662.3-201ENST00000625131 237 ntBASIC7.09□□□□□ -1.27
HOXC9P31274 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
HOXC9P31274 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HOXC9P31274 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HOXC9P31274 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
HOXC9P31274 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
HOXC9P31274 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC7.08□□□□□ -1.28
HOXC9P31274 INTS6P1-201ENST00000504674 2530 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
HOXC9P31274 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 MAPK10-270ENST00000641102 3538 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
HOXC9P31274 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 HSPA8P15-201ENST00000401676 786 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC7.08□□□□□ -1.28
HOXC9P31274 NIPA2P1-201ENST00000426223 976 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 RPS4XP16-201ENST00000427198 791 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AC104837.2-201ENST00000427236 424 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AL049745.1-201ENST00000433953 286 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC006466.1-201ENST00000438721 289 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 LINC02210-201ENST00000444561 288 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 TRY2P-201ENST00000448860 689 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 RPS3AP53-201ENST00000454716 778 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC097484.1-201ENST00000471148 389 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 RPL7P40-201ENST00000481703 745 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AC083982.1-201ENST00000485679 344 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC091912.1-201ENST00000511351 248 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC7.08□□□□□ -1.28
HOXC9P31274 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC7.08□□□□□ -1.28
HOXC9P31274 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC005252.1-201ENST00000604518 1063 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AC009597.2-201ENST00000604659 592 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 MIR6820-201ENST00000611508 62 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 AC087385.3-201ENST00000620477 187 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 MTCO1P1-201ENST00000624263 1081 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 THAP12P4-201ENST00000528321 2266 ntBASIC7.08□□□□□ -1.28
HOXC9P31274 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC7.08□□□□□ -1.28
HOXC9P31274 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
HOXC9P31274 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
HOXC9P31274 SELE-205ENST00000367777 3576 ntTSL 5 BASIC7.08□□□□□ -1.28
HOXC9P31274 AC010329.1-201ENST00000593903 8328 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HOXC9P31274 AL117378.2-201ENST00000622916 1337 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
HOXC9P31274 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HOXC9P31274 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HOXC9P31274 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
HOXC9P31274 RHOT1P3-201ENST00000436571 331 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.07□□□□□ -1.28
HOXC9P31274 RNA5SP228-201ENST00000516232 133 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 RN7SKP248-201ENST00000516278 305 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 SCARNA20.4-201ENST00000516969 131 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC7.07□□□□□ -1.28
HOXC9P31274 MIR3934-201ENST00000579806 107 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC7.07□□□□□ -1.28
HOXC9P31274 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC7.07□□□□□ -1.28
HOXC9P31274 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.07□□□□□ -1.28
HOXC9P31274 AL627230.1-201ENST00000613077 211 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 AL591926.8-201ENST00000616876 211 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 AC069542.2-201ENST00000624816 216 ntBASIC7.07□□□□□ -1.28
HOXC9P31274 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HOXC9P31274 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms