Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 EIF3EP1-201ENST00000433978 1316 ntBASIC4.13□□□□□ -1.75
HLA-DQA1P01909 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.13□□□□□ -1.75
HLA-DQA1P01909 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 RN7SKP250-201ENST00000363924 321 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AL157702.1-201ENST00000398764 426 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 RNA5SP487-201ENST00000410186 122 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 RPL36AP10-201ENST00000421785 322 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 FTLP19-201ENST00000433300 394 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC094019.1-201ENST00000434678 472 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 MTCO3P17-201ENST00000443775 513 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AL358876.1-201ENST00000453364 1075 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 RPL12P30-201ENST00000488389 499 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC073358.1-201ENST00000505671 684 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 GUSBP9-201ENST00000510138 584 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SNORA74.1-201ENST00000516320 180 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AL078601.3-201ENST00000573303 535 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 MIR3154-201ENST00000577829 84 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC011840.5-201ENST00000582125 771 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AP005136.2-201ENST00000583253 1049 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC011500.1-201ENST00000601963 469 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 IGKV2OR2-1-201ENST00000605129 304 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC244100.4-201ENST00000617747 388 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 BX005214.3-202ENST00000619809 325 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AC083843.3-201ENST00000623679 2186 ntBASIC4.12□□□□□ -1.75
HLA-DQA1P01909 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AC139713.2-215ENST00000641428 5037 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AL450345.1-202ENST00000605741 3881 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AC013442.1-201ENST00000397347 228 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AL359885.1-201ENST00000415786 903 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 OR13Z1P-201ENST00000416141 834 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 VN1R3-201ENST00000418822 919 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 NFYAP1-201ENST00000431953 972 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 CLNS1AP1-201ENST00000435954 682 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC4.11□□□□□ -1.75
HLA-DQA1P01909 RN7SL254P-201ENST00000460609 284 ntBASIC4.11□□□□□ -1.75
HLA-DQA1P01909 HMGN1P16-201ENST00000508308 283 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 156.8 ms