Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL133388.1-201ENST00000404509 287 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL390774.1-201ENST00000411924 246 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RPL35AP24-201ENST00000413846 330 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 GSTM5P1-201ENST00000434751 660 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 NDUFB4P8-201ENST00000435351 367 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 MTND4LP12-201ENST00000448237 295 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL672138.1-201ENST00000450604 1015 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 HMGB1P44-201ENST00000508597 572 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 SCARNA16.4-201ENST00000516956 187 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RNU6-943P-201ENST00000516960 98 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AP004607.2-201ENST00000533949 322 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 OR11H3P-201ENST00000554547 982 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 FKBP1AP1-201ENST00000594588 318 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL139124.1-201ENST00000609123 421 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL138960.1-201ENST00000613838 513 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC021422.1-201ENST00000621212 473 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC135068.5-201ENST00000624197 983 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC073869.8-201ENST00000641806 335 ntBASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
LHX3Q9UBR4 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 RNA5SP339-201ENST00000390987 122 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR4K12P-201ENST00000406538 961 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 NACAP7-201ENST00000407371 609 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 DSTNP5-201ENST00000427921 523 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 SEPT14P1-201ENST00000458703 648 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AP001960.1-201ENST00000506494 658 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 BX510359.5-201ENST00000515651 304 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR8G3P-201ENST00000533406 921 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC010547.7-201ENST00000570323 333 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC010615.3-201ENST00000597319 394 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC096586.2-201ENST00000610260 441 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AL352984.2-202ENST00000613699 155 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AP005212.4-201ENST00000614206 710 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC109583.2-201ENST00000617367 129 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC130360.2-201ENST00000533477 1556 ntBASIC5.5□□□□□ -1.53
LHX3Q9UBR4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.5□□□□□ -1.53
LHX3Q9UBR4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AL513548.1-201ENST00000562904 1724 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AL353796.1-201ENST00000561542 3241 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AL355834.1-201ENST00000556602 3965 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC100757.1-201ENST00000616872 1835 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 DBIP1-201ENST00000401435 260 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms