Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.37
TRIM39Q9HCM9 AC062022.1-201ENST00000451026 1684 ntBASIC6.46□□□□□ -1.37
TRIM39Q9HCM9 AL161901.1-201ENST00000624954 3425 ntBASIC6.46□□□□□ -1.37
TRIM39Q9HCM9 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.37
TRIM39Q9HCM9 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.46□□□□□ -1.37
TRIM39Q9HCM9 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC245036.1-201ENST00000391727 309 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 RPS27AP11-201ENST00000402798 447 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 SFR1P1-201ENST00000403720 688 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 RN7SKP221-201ENST00000410420 301 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC234781.4-201ENST00000419384 244 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 DPY19L1P2-201ENST00000426647 915 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 RAC1P8-201ENST00000427086 527 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 MTND1P29-201ENST00000448112 647 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 MYO5BP2-201ENST00000449815 1277 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 ART2BP-201ENST00000453501 499 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 CDC42P1-201ENST00000456658 548 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC236972.4-201ENST00000458091 963 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 SUMO2P4-201ENST00000504193 276 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC091860.1-201ENST00000505723 432 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 OR4A2P-201ENST00000527276 913 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 MIR5095-201ENST00000578844 88 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC022662.1-201ENST00000580252 331 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC125494.3-201ENST00000602759 455 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL953862.2-201ENST00000603089 820 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC004805.3-201ENST00000603178 310 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC009090.3-201ENST00000616553 565 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC009318.3-201ENST00000616916 503 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 STMN1P1-201ENST00000617809 440 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 MIR6085-201ENST00000618314 110 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL121950.1-201ENST00000624993 2077 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 EEF1A1P12-201ENST00000443590 1346 ntBASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.46□□□□□ -1.38
TRIM39Q9HCM9 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL662795.2-201ENST00000624252 3706 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 POMP-202ENST00000460403 1428 ntTSL 3 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 RNU1-84P-201ENST00000365447 164 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 SNORA64.3-201ENST00000365647 134 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 RNU6-532P-201ENST00000384318 107 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 RNU5A-2P-201ENST00000384337 116 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL034374.1-201ENST00000406329 351 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL590084.1-201ENST00000407885 387 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC013404.1-201ENST00000413068 249 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 BX119904.4-201ENST00000424402 301 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL365396.1-201ENST00000430854 671 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 LDHAP2-201ENST00000437325 985 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC234771.2-201ENST00000445718 597 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC007327.1-201ENST00000447461 264 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 RPL23AP64-201ENST00000469465 435 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC044810.1-201ENST00000480271 711 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC104687.1-201ENST00000485829 412 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 H3F3AP3-201ENST00000497682 407 ntBASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.45□□□□□ -1.38
TRIM39Q9HCM9 snoZ278.1-201ENST00000517059 112 ntBASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms