Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 SMG1P6-201ENST00000532337 2930 ntBASIC7.55□□□□□ -1.2
CHMP4AQ9BY43 AC117409.1-201ENST00000470499 1310 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 OR13C1P-202ENST00000641378 2919 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RNA5SP510-201ENST00000364697 99 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AL451046.1-201ENST00000406097 534 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC245060.4-201ENST00000413293 1121 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 TRGV6-201ENST00000417928 299 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RPL34P3-201ENST00000421454 338 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AL022331.1-201ENST00000429025 477 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RPS29P14-201ENST00000431518 171 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 NPM1P18-201ENST00000434232 732 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC096775.1-201ENST00000437724 448 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 FHP1-201ENST00000442741 703 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RPL31P15-201ENST00000449770 338 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RN7SKP288-201ENST00000516227 268 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 MTCYBP19-201ENST00000517463 1124 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 RPL23AP61-201ENST00000623642 466 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 AL731532.1-201ENST00000623972 4236 ntBASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.54□□□□□ -1.2
CHMP4AQ9BY43 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 GSTA12P-201ENST00000402398 508 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC017019.1-201ENST00000426129 261 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 RN7SL72P-201ENST00000460697 269 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ACTR6P1-201ENST00000514311 1104 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 SNORD46.2-201ENST00000516021 102 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 EIF4A2P3-201ENST00000525903 1055 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 MTATP6P25-201ENST00000574491 261 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 TXNP4-201ENST00000575018 310 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 uc_338.26-201ENST00000612659 160 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 SNX18P12-201ENST00000624821 759 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 NEPNP-201ENST00000404786 1371 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 CASC19-248ENST00000641674 1356 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 AC007382.1-201ENST00000624376 2618 ntBASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CHMP4AQ9BY43 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC7.52□□□□□ -1.2
CHMP4AQ9BY43 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
CHMP4AQ9BY43 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
CHMP4AQ9BY43 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 NCSTNP1-201ENST00000406229 144 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 RNA5SP296-201ENST00000410523 111 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 AL691447.1-201ENST00000419456 387 ntBASIC7.52□□□□□ -1.21
CHMP4AQ9BY43 IPPKP1-201ENST00000422501 768 ntBASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms