Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AL020997.2-201ENST00000602607 184 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 AC005252.1-201ENST00000604518 1063 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 AL359757.1-201ENST00000623176 255 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 BX284613.1-201ENST00000452221 1641 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 AL391262.1-201ENST00000556558 1992 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 AC083899.1-201ENST00000454465 3819 ntBASIC8.79□□□□□ -1
IFT140Q96RY7 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
IFT140Q96RY7 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC8.78□□□□□ -1
IFT140Q96RY7 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 RNU1-136P-201ENST00000384181 164 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC8.78□□□□□ -1
IFT140Q96RY7 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 RIMKLBP2-201ENST00000424737 654 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 AC079168.1-201ENST00000458741 345 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 OR11H3P-201ENST00000554547 982 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC8.78□□□□□ -1
IFT140Q96RY7 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC8.78□□□□□ -1
IFT140Q96RY7 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC8.78□□□□□ -1
IFT140Q96RY7 AC010857.1-201ENST00000606398 594 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 AC135068.5-201ENST00000624197 983 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 AC100871.1-201ENST00000507871 1456 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
IFT140Q96RY7 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC8.78□□□□□ -1
IFT140Q96RY7 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 AL353796.1-201ENST00000561542 3241 ntBASIC8.78□□□□□ -1
IFT140Q96RY7 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
IFT140Q96RY7 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC8.78□□□□□ -1
IFT140Q96RY7 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC8.78□□□□□ -1
IFT140Q96RY7 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1
IFT140Q96RY7 RNA5-8SP5-201ENST00000365304 152 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC8.77□□□□□ -1
IFT140Q96RY7 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC8.77□□□□□ -1
IFT140Q96RY7 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC8.77□□□□□ -1
IFT140Q96RY7 AP003170.5-201ENST00000397185 335 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 MIR1193-201ENST00000408109 78 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 SNX10-203ENST00000409367 746 ntTSL 5 BASIC8.77□□□□□ -1
IFT140Q96RY7 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC8.77□□□□□ -1
IFT140Q96RY7 snoU13.1-201ENST00000459157 104 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 RN7SL41P-201ENST00000476144 297 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 RPL7P40-201ENST00000481703 745 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC8.77□□□□□ -1
IFT140Q96RY7 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC8.77□□□□□ -1
IFT140Q96RY7 SCARNA9-201ENST00000530422 353 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC8.77□□□□□ -1
IFT140Q96RY7 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC8.77□□□□□ -1
IFT140Q96RY7 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC8.77□□□□□ -1
IFT140Q96RY7 AC067852.5-201ENST00000589299 310 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 OR52H1-202ENST00000641796 1061 ntBASIC8.77□□□□□ -1
IFT140Q96RY7 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 ZNF840P-201ENST00000504759 1996 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AC007998.4-201ENST00000612496 2533 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 ATP5A1P1-201ENST00000454088 1321 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AC234779.1-201ENST00000425910 285 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 RPS27AP6-201ENST00000427962 448 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 SNORA70.11-201ENST00000515987 138 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 SNORA70.13-201ENST00000516116 138 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC8.77□□□□□ -1.01
IFT140Q96RY7 AP005432.2-201ENST00000608162 586 ntBASIC8.77□□□□□ -1.01
IFT140Q96RY7 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC8.76□□□□□ -1.01
IFT140Q96RY7 AL031123.3-201ENST00000623345 1837 ntBASIC8.76□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms