| FOXC1 | Q12948 | TCF7-202 | ENST00000378560 | 2929 nt | TSL 1 (best) BASIC | 7.47 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | ARID5B-202 | ENST00000309334 | 3141 nt | TSL 5 BASIC | 7.47 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | DDX50P1-201 | ENST00000438163 | 2400 nt | BASIC | 7.47 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | AC008627.1-201 | ENST00000517511 | 1704 nt | BASIC | 7.47 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | AC104066.2-201 | ENST00000564513 | 1741 nt | TSL 3 BASIC | 7.47 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | SLC26A5-208 | ENST00000393730 | 2498 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | ALMS1-206 | ENST00000613296 | 12925 nt | APPRIS P2 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | C1QTNF3-AMACR-201 | ENST00000382079 | 3424 nt | APPRIS P1 TSL 2 BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | LINC00210-201 | ENST00000431637 | 1584 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | CEP97-206 | ENST00000494050 | 2870 nt | APPRIS ALT2 TSL 2 BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | CENPL-203 | ENST00000367710 | 1771 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | AP002001.1-201 | ENST00000526101 | 1759 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | AL445231.1-201 | ENST00000445523 | 1814 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.21 | | |
| FOXC1 | Q12948 | CHD8-201 | ENST00000399982 | 8229 nt | APPRIS ALT2 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ATP6V0D2-201 | ENST00000285393 | 2446 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MAPK10-325 | ENST00000641537 | 2623 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | PSMD10-204 | ENST00000361815 | 768 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MIR135B-201 | ENST00000362189 | 97 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RNU6-223P-201 | ENST00000362830 | 107 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MDM4-202 | ENST00000367180 | 547 nt | TSL 3 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ST3GAL3-212 | ENST00000372362 | 468 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | Y_RNA.574-201 | ENST00000384766 | 95 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | TRAV13-1-201 | ENST00000390436 | 360 nt | APPRIS P1 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | SNORD115.1-201 | ENST00000391109 | 76 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC245036.1-201 | ENST00000391727 | 309 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC113608.1-201 | ENST00000398740 | 305 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RNU4-14P-201 | ENST00000410858 | 122 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MTATP6P18-201 | ENST00000417994 | 673 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC105399.1-201 | ENST00000422418 | 418 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC064875.1-203 | ENST00000422996 | 582 nt | TSL 4 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AL589872.1-201 | ENST00000426602 | 288 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | BMS1P19-201 | ENST00000433925 | 393 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC092813.2-201 | ENST00000434540 | 399 nt | TSL 3 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RPL12P11-201 | ENST00000439970 | 501 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC064862.5-201 | ENST00000440618 | 334 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | H2AFZP6-201 | ENST00000444403 | 394 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC108868.2-201 | ENST00000451464 | 511 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | HMGB3P22-202 | ENST00000451823 | 572 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC019080.2-201 | ENST00000453859 | 394 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | PPP1R2P5-201 | ENST00000457256 | 603 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | APOOP2-201 | ENST00000461561 | 539 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RN7SL790P-201 | ENST00000474043 | 298 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC091906.1-201 | ENST00000511310 | 391 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RN7SKP295-201 | ENST00000517264 | 153 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | TPT1-AS1-207 | ENST00000520310 | 563 nt | TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | KCTD9P6-201 | ENST00000522306 | 950 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC083923.1-201 | ENST00000523708 | 376 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ST3GAL3-232 | ENST00000531451 | 420 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC109635.4-202 | ENST00000531666 | 412 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AL445363.1-202 | ENST00000553697 | 545 nt | TSL 3 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | LINC00644-201 | ENST00000555156 | 295 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC018558.5-201 | ENST00000565840 | 952 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC141257.3-201 | ENST00000572906 | 215 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | DIAPH2-AS1-204 | ENST00000579945 | 974 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RN7SL32P-201 | ENST00000580514 | 281 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC003973.1-201 | ENST00000600071 | 546 nt | TSL 4 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MIR99AHG-211 | ENST00000602323 | 475 nt | TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC108451.2-201 | ENST00000603875 | 538 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC073389.2-201 | ENST00000606726 | 571 nt | TSL 4 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AL031281.2-201 | ENST00000606754 | 748 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AL132796.3-201 | ENST00000624703 | 900 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC091953.4-201 | ENST00000625179 | 341 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC012557.3-201 | ENST00000626439 | 255 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MIR325HG-202 | ENST00000626832 | 598 nt | TSL 4 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | GABPB2-201 | ENST00000368916 | 1680 nt | APPRIS ALT2 TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RBM41-201 | ENST00000372479 | 1662 nt | APPRIS P3 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC007012.2-201 | ENST00000623206 | 1676 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ADGRE3-202 | ENST00000344373 | 2267 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | TTC6-203 | ENST00000476979 | 2253 nt | TSL 2 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC009090.4-201 | ENST00000623921 | 3691 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | BHLHB9-205 | ENST00000457056 | 4082 nt | APPRIS P1 TSL 4 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ENPP6-201 | ENST00000296741 | 3936 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ACSL1-211 | ENST00000515030 | 3948 nt | APPRIS P3 TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | GJA9-202 | ENST00000360786 | 1901 nt | APPRIS P1 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | COPS4-201 | ENST00000264389 | 1744 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ERGIC1-201 | ENST00000326654 | 3952 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | IARS2P1-201 | ENST00000508226 | 3173 nt | BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC091173.1-201 | ENST00000505627 | 2750 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | MAT1A-201 | ENST00000372213 | 3410 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | RPL7L1-208 | ENST00000493763 | 4476 nt | APPRIS P1 TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ANKFY1-201 | ENST00000341657 | 7418 nt | APPRIS ALT1 TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | BRDT-203 | ENST00000370389 | 3696 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | CTNNA2-203 | ENST00000402739 | 3684 nt | TSL 1 (best) BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | E2F5-208 | ENST00000521429 | 1551 nt | TSL 5 BASIC | 7.46 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | PDE1A-203 | ENST00000409365 | 2034 nt | TSL 5 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC069228.1-201 | ENST00000546936 | 1615 nt | TSL 3 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | NKIRAS1-209 | ENST00000614374 | 1612 nt | APPRIS P2 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | HBS1L-204 | ENST00000367826 | 2703 nt | TSL 2 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | KCNE1-206 | ENST00000432085 | 3184 nt | APPRIS P1 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC005154.1-228 | ENST00000454922 | 1405 nt | TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ELF5-201 | ENST00000257832 | 2321 nt | APPRIS P1 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | CSMD2-203 | ENST00000373377 | 3212 nt | TSL 2 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ABCA4-207 | ENST00000536513 | 3740 nt | TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | STPG1-203 | ENST00000374409 | 2804 nt | APPRIS ALT2 TSL 2 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | ERCC6-201 | ENST00000355832 | 8008 nt | APPRIS P1 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | AC084816.1-210 | ENST00000540895 | 1920 nt | TSL 2 BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | CDR1-202 | ENST00000625883 | 1485 nt | BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | SLC23A2-202 | ENST00000379333 | 6962 nt | APPRIS P1 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | NSRP1-217 | ENST00000612959 | 2420 nt | TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |
| FOXC1 | Q12948 | CYFIP2-221 | ENST00000618329 | 4256 nt | APPRIS P1 TSL 1 (best) BASIC | 7.45 | □□□□□ -1.22 | | |