Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
SCN4AP35499 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.43□□□□□ -1.38
SCN4AP35499 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.43□□□□□ -1.38
SCN4AP35499 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 SDAD1P1-202ENST00000524156 2051 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 RNU1-59P-201ENST00000364829 162 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
SCN4AP35499 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.43□□□□□ -1.38
SCN4AP35499 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.43□□□□□ -1.38
SCN4AP35499 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.43□□□□□ -1.38
SCN4AP35499 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.43□□□□□ -1.38
SCN4AP35499 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
SCN4AP35499 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.43□□□□□ -1.38
SCN4AP35499 AL627230.1-201ENST00000613077 211 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 U1.25-201ENST00000614085 162 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 AL591926.8-201ENST00000616876 211 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 U1.34-201ENST00000618578 162 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 U1.31-201ENST00000620022 160 ntBASIC6.43□□□□□ -1.38
SCN4AP35499 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.43□□□□□ -1.38
SCN4AP35499 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
SCN4AP35499 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SCN4AP35499 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 RNU2-50P-201ENST00000410494 143 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 RPS26P38-201ENST00000414476 348 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.42□□□□□ -1.38
SCN4AP35499 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC6.42□□□□□ -1.38
SCN4AP35499 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 KNOP1P3-201ENST00000446933 426 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 CYCSP42-201ENST00000450823 238 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.42□□□□□ -1.38
SCN4AP35499 IGKV1-32-201ENST00000519290 311 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 AC008147.3-201ENST00000548666 354 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.42□□□□□ -1.38
SCN4AP35499 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
SCN4AP35499 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 AC092070.2-203ENST00000598377 3644 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 MAPK10-304ENST00000641341 3984 ntBASIC6.42□□□□□ -1.38
SCN4AP35499 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.42□□□□□ -1.38
SCN4AP35499 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.42□□□□□ -1.38
SCN4AP35499 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SCN4AP35499 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
SCN4AP35499 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
SCN4AP35499 AL121886.1-201ENST00000358609 435 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 GLULP6-201ENST00000399502 913 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 RPSAP35-201ENST00000413753 818 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 NDUFA5P8-201ENST00000449019 346 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SCN4AP35499 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SCN4AP35499 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC6.41□□□□□ -1.38
SCN4AP35499 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC034205.1-201ENST00000520621 638 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.41□□□□□ -1.38
SCN4AP35499 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.41□□□□□ -1.38
SCN4AP35499 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 H3F3BP2-201ENST00000583907 357 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 MIR4420-201ENST00000583944 77 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 HIRAP1-201ENST00000605318 787 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 AL392048.1-201ENST00000613946 534 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 AL078621.3-201ENST00000623707 2042 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC091046.3-201ENST00000631455 1574 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.41□□□□□ -1.38
SCN4AP35499 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms