Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC012146.2-201ENST00000576545 416 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC027243.2-201ENST00000602530 724 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC090607.5-201ENST00000615692 224 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 MIR6729-201ENST00000618194 65 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 SNORA17.5-201ENST00000630429 132 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC103703.1-201ENST00000634783 663 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 MIR4302-201ENST00000638058 60 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 GAPDHP24-201ENST00000328713 983 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 SNORA64.1-201ENST00000362600 132 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 RPS3AP2-201ENST00000407190 754 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC079809.1-201ENST00000415468 276 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC009784.1-201ENST00000426484 460 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 HMGB3P24-201ENST00000433260 622 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 NDUFB4P8-201ENST00000435351 367 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL512637.1-201ENST00000439523 1231 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL391987.1-201ENST00000441025 200 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 RPL36AP39-201ENST00000445859 318 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AP000648.1-201ENST00000529682 397 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 OR5AM1P-201ENST00000532136 1032 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL359219.2-201ENST00000555184 348 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 RN7SL753P-201ENST00000581238 290 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC107993.1-201ENST00000591343 684 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL031601.1-201ENST00000605702 394 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 MIR6862-1-201ENST00000613016 70 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 MIR6862-2-201ENST00000614755 70 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC021766.1-201ENST00000624404 741 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CDY3P-201ENST00000454543 1618 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 MAPK10-328ENST00000641553 4009 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC006206.1-201ENST00000544842 3387 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC009962.1-201ENST00000567327 3813 ntBASIC4.23□□□□□ -1.73
HLA-DMBP28068 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DMBP28068 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 AC003985.2-201ENST00000562268 1669 ntBASIC4.22□□□□□ -1.73
HLA-DMBP28068 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DMBP28068 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 MRE11P1-201ENST00000464884 2127 ntBASIC4.22□□□□□ -1.73
HLA-DMBP28068 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DMBP28068 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 AL034546.1-201ENST00000623740 3693 ntBASIC4.22□□□□□ -1.73
HLA-DMBP28068 PROS2P-201ENST00000474651 1951 ntBASIC4.22□□□□□ -1.73
HLA-DMBP28068 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DMBP28068 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DMBP28068 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms