Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ZNF965P-201ENST00000432501 817 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 FTLP19-201ENST00000433300 394 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC006994.1-201ENST00000438212 839 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 PTMAP6-201ENST00000439110 327 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AL445466.1-201ENST00000448432 357 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC090543.1-201ENST00000492168 485 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.86□□□□□ -1.31
COL6A1P12109 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.86□□□□□ -1.31
COL6A1P12109 PCNAP4-201ENST00000532690 730 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC007834.2-201ENST00000536310 343 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.86□□□□□ -1.31
COL6A1P12109 GLRXP2-201ENST00000555594 321 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AL356801.1-201ENST00000559320 294 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 MTND3P13-201ENST00000574391 343 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC090666.1-201ENST00000578241 445 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AP001496.3-201ENST00000580230 913 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC015818.6-201ENST00000584274 634 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 AC113368.1-201ENST00000603736 382 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 AL691477.1-201ENST00000624398 162 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.86□□□□□ -1.31
COL6A1P12109 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 AL133243.4-201ENST00000623116 3109 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 OR10AB1P-202ENST00000641219 1686 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
COL6A1P12109 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
COL6A1P12109 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
COL6A1P12109 CASC19-243ENST00000641588 1546 ntBASIC6.86□□□□□ -1.31
COL6A1P12109 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 NF1-214ENST00000490416 1329 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.85□□□□□ -1.31
COL6A1P12109 AC024651.2-201ENST00000562480 2098 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 OR2M1P-201ENST00000318104 951 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.85□□□□□ -1.31
COL6A1P12109 U3.7-201ENST00000363668 216 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 RNU6-40P-201ENST00000384254 107 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 CASP3-203ENST00000393588 677 ntTSL 4 BASIC6.85□□□□□ -1.31
COL6A1P12109 AL121977.1-201ENST00000401636 979 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 RPL35AP3-201ENST00000414680 288 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 AL031313.1-201ENST00000448435 256 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC112492.1-201ENST00000449607 712 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 COPS8P2-201ENST00000473228 627 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.85□□□□□ -1.31
COL6A1P12109 RN7SL727P-201ENST00000482164 296 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC108693.1-201ENST00000496068 432 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC091435.1-201ENST00000505442 584 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 SNORA70.20-201ENST00000516848 126 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
COL6A1P12109 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.85□□□□□ -1.31
COL6A1P12109 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 AL442163.2-201ENST00000553912 710 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
COL6A1P12109 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC6.85□□□□□ -1.31
COL6A1P12109 FAM60CP-201ENST00000591086 664 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC125494.2-201ENST00000602431 657 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 GAS5-AS1-201ENST00000602767 694 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC139493.1-201ENST00000604368 397 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AL008723.3-201ENST00000608926 449 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC096586.1-201ENST00000610267 561 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AC079395.2-201ENST00000610982 737 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 MIR8084-201ENST00000614105 89 ntBASIC6.85□□□□□ -1.31
COL6A1P12109 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms