Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 AL135905.2-201ENST00000584934 1404 ntBASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SNX9Q9Y5X1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 AC012618.2-201ENST00000428058 849 ntBASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 AC233702.5-201ENST00000584107 538 ntBASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 TMEM179-206ENST00000616017 1645 ntBASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.03■□□□□ 0.96
SNX9Q9Y5X1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 TUBB8P6-201ENST00000436895 1288 ntBASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 KRT18P16-201ENST00000510337 1294 ntBASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SNX9Q9Y5X1 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
SNX9Q9Y5X1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.02■□□□□ 0.95
SNX9Q9Y5X1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
SNX9Q9Y5X1 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.01■□□□□ 0.95
SNX9Q9Y5X1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 AL596275.1-201ENST00000423464 877 ntBASIC21■□□□□ 0.95
SNX9Q9Y5X1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 AF186192.3-201ENST00000583427 947 ntBASIC21■□□□□ 0.95
SNX9Q9Y5X1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SNX9Q9Y5X1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SNX9Q9Y5X1 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms