Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.38■□□□□ 0.85
AP4E1Q9UPM8 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 AP006587.1-201ENST00000534129 1502 ntBASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
AP4E1Q9UPM8 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 CD99P1-205ENST00000527459 561 ntBASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
AP4E1Q9UPM8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 ESRRAP1-201ENST00000400596 1257 ntBASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
AP4E1Q9UPM8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 KRT17P3-201ENST00000420566 1262 ntBASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 YBX1P10-201ENST00000444752 975 ntBASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 AC069544.1-201ENST00000609399 999 ntBASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.34■□□□□ 0.85
AP4E1Q9UPM8 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
AP4E1Q9UPM8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms