Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ME3-201ENST00000323418 1068 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
LINC00477Q96M19 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LINC00477Q96M19 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 LSM12P1-201ENST00000411836 588 ntBASIC14.68□□□□□ -0.06
LINC00477Q96M19 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 TP73-202ENST00000354437 2140 ntTSL 5 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
LINC00477Q96M19 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LINC00477Q96M19 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 AP000974.1-201ENST00000623909 2387 ntBASIC14.67□□□□□ -0.06
LINC00477Q96M19 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 AC026271.2-201ENST00000428091 497 ntBASIC14.67□□□□□ -0.06
LINC00477Q96M19 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 AC098818.2-201ENST00000564925 2320 ntBASIC14.67□□□□□ -0.06
LINC00477Q96M19 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC00477Q96M19 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.67□□□□□ -0.06
LINC00477Q96M19 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 AL032819.2-201ENST00000624543 2162 ntBASIC14.66□□□□□ -0.06
LINC00477Q96M19 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LINC00477Q96M19 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC00477Q96M19 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms