Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
HPS3Q969F9 Z82202.1-201ENST00000623446 1880 ntBASIC21.75■■□□□ 1.07
HPS3Q969F9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.75■■□□□ 1.07
HPS3Q969F9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.75■■□□□ 1.07
HPS3Q969F9 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.75■■□□□ 1.07
HPS3Q969F9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
HPS3Q969F9 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HPS3Q969F9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.75■■□□□ 1.07
HPS3Q969F9 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.75■■□□□ 1.07
HPS3Q969F9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.75■■□□□ 1.07
HPS3Q969F9 AC233263.1-201ENST00000578059 224 ntBASIC21.75■■□□□ 1.07
HPS3Q969F9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.75■■□□□ 1.07
HPS3Q969F9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HPS3Q969F9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.75■■□□□ 1.07
HPS3Q969F9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HPS3Q969F9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.75■■□□□ 1.07
HPS3Q969F9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HPS3Q969F9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HPS3Q969F9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.74■■□□□ 1.07
HPS3Q969F9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.74■■□□□ 1.07
HPS3Q969F9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.74■■□□□ 1.07
HPS3Q969F9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HPS3Q969F9 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.74■■□□□ 1.07
HPS3Q969F9 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HPS3Q969F9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.74■■□□□ 1.07
HPS3Q969F9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.74■■□□□ 1.07
HPS3Q969F9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.74■■□□□ 1.07
HPS3Q969F9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HPS3Q969F9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HPS3Q969F9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HPS3Q969F9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
HPS3Q969F9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.73■■□□□ 1.07
HPS3Q969F9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.73■■□□□ 1.07
HPS3Q969F9 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HPS3Q969F9 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HPS3Q969F9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
HPS3Q969F9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
HPS3Q969F9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.72■■□□□ 1.07
HPS3Q969F9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.72■■□□□ 1.07
HPS3Q969F9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.72■■□□□ 1.07
HPS3Q969F9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.72■■□□□ 1.07
HPS3Q969F9 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.72■■□□□ 1.07
HPS3Q969F9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HPS3Q969F9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HPS3Q969F9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.71■■□□□ 1.07
HPS3Q969F9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.71■■□□□ 1.07
HPS3Q969F9 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
HPS3Q969F9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.71■■□□□ 1.07
HPS3Q969F9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.71■■□□□ 1.07
HPS3Q969F9 MIR4651-201ENST00000582622 73 ntBASIC21.71■■□□□ 1.07
HPS3Q969F9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.71■■□□□ 1.07
HPS3Q969F9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.71■■□□□ 1.07
HPS3Q969F9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.71■■□□□ 1.07
HPS3Q969F9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HPS3Q969F9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HPS3Q969F9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.71■■□□□ 1.07
HPS3Q969F9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.71■■□□□ 1.07
HPS3Q969F9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
HPS3Q969F9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.7■■□□□ 1.07
HPS3Q969F9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HPS3Q969F9 AC005332.7-201ENST00000614046 2005 ntBASIC21.7■■□□□ 1.06
HPS3Q969F9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HPS3Q969F9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HPS3Q969F9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms