Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 AC133041.1-202ENST00000642053 222 ntBASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
ZNF549Q6P9A3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 HLA-L-209ENST00000420110 1011 ntBASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 Z82202.1-201ENST00000623446 1880 ntBASIC19.48■□□□□ 0.71
ZNF549Q6P9A3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ZNF549Q6P9A3 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ZNF549Q6P9A3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ZNF549Q6P9A3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 AL355802.2-201ENST00000402069 882 ntBASIC19.44■□□□□ 0.7
ZNF549Q6P9A3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms