Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
BRCC3P46736 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCC3P46736 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCC3P46736 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCC3P46736 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCC3P46736 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.92■□□□□ 0.94
BRCC3P46736 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.92■□□□□ 0.94
BRCC3P46736 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
BRCC3P46736 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
BRCC3P46736 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
BRCC3P46736 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BRCC3P46736 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.91■□□□□ 0.94
BRCC3P46736 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.91■□□□□ 0.94
BRCC3P46736 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.91■□□□□ 0.94
BRCC3P46736 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.91■□□□□ 0.94
BRCC3P46736 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.91■□□□□ 0.94
BRCC3P46736 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.91■□□□□ 0.94
BRCC3P46736 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.91■□□□□ 0.94
BRCC3P46736 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 MIR6786-201ENST00000616843 113 ntBASIC20.91■□□□□ 0.94
BRCC3P46736 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
BRCC3P46736 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BRCC3P46736 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 CYP2D8P-201ENST00000433633 1490 ntBASIC20.9■□□□□ 0.94
BRCC3P46736 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
BRCC3P46736 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
BRCC3P46736 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.9■□□□□ 0.94
BRCC3P46736 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
BRCC3P46736 B3GAT3P1-201ENST00000471720 806 ntBASIC20.9■□□□□ 0.94
BRCC3P46736 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.9■□□□□ 0.94
BRCC3P46736 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.9■□□□□ 0.94
BRCC3P46736 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.9■□□□□ 0.94
BRCC3P46736 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
BRCC3P46736 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 LINC01006-201ENST00000333319 2292 ntBASIC20.9■□□□□ 0.94
BRCC3P46736 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
BRCC3P46736 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BRCC3P46736 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BRCC3P46736 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
BRCC3P46736 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BRCC3P46736 FSCN1P1-201ENST00000568912 1481 ntBASIC20.89■□□□□ 0.94
BRCC3P46736 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
BRCC3P46736 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
BRCC3P46736 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.89■□□□□ 0.93
BRCC3P46736 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
BRCC3P46736 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.89■□□□□ 0.93
BRCC3P46736 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
BRCC3P46736 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.89■□□□□ 0.93
BRCC3P46736 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.89■□□□□ 0.93
BRCC3P46736 FITM1-202ENST00000559294 800 ntBASIC20.89■□□□□ 0.93
BRCC3P46736 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
BRCC3P46736 AC131212.4-201ENST00000623606 975 ntBASIC20.89■□□□□ 0.93
BRCC3P46736 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.89■□□□□ 0.93
BRCC3P46736 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.89■□□□□ 0.93
BRCC3P46736 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
BRCC3P46736 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
BRCC3P46736 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.88■□□□□ 0.93
BRCC3P46736 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 AC099778.1-201ENST00000568593 1911 ntBASIC20.88■□□□□ 0.93
BRCC3P46736 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.88■□□□□ 0.93
BRCC3P46736 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
BRCC3P46736 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms