Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AIRN-201ENST00000601203 4374 ntBASIC19.2■□□□□ 0.66
TNFP01375 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TNFP01375 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 FEM1AP1-201ENST00000431297 1995 ntBASIC19.19■□□□□ 0.66
TNFP01375 KRT8P8-201ENST00000434750 1448 ntBASIC19.19■□□□□ 0.66
TNFP01375 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 AL512408.1-201ENST00000569378 2000 ntBASIC19.19■□□□□ 0.66
TNFP01375 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 AC004980.1-204ENST00000429707 299 ntBASIC19.19■□□□□ 0.66
TNFP01375 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.19■□□□□ 0.66
TNFP01375 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.19■□□□□ 0.66
TNFP01375 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.19■□□□□ 0.66
TNFP01375 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
TNFP01375 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.19■□□□□ 0.66
TNFP01375 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TNFP01375 AC012306.2-201ENST00000609350 630 ntBASIC19.19■□□□□ 0.66
TNFP01375 MIR6786-201ENST00000616843 113 ntBASIC19.19■□□□□ 0.66
TNFP01375 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.19■□□□□ 0.66
TNFP01375 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.19■□□□□ 0.66
TNFP01375 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.19■□□□□ 0.66
TNFP01375 GABARAPL3-202ENST00000624044 1851 ntBASIC19.19■□□□□ 0.66
TNFP01375 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.19■□□□□ 0.66
TNFP01375 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TNFP01375 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TNFP01375 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TNFP01375 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.18■□□□□ 0.66
TNFP01375 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.18■□□□□ 0.66
TNFP01375 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.18■□□□□ 0.66
TNFP01375 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.18■□□□□ 0.66
TNFP01375 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TNFP01375 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.17■□□□□ 0.66
TNFP01375 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.17■□□□□ 0.66
TNFP01375 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.17■□□□□ 0.66
TNFP01375 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TNFP01375 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.17■□□□□ 0.66
TNFP01375 KRT18P21-201ENST00000515767 1272 ntBASIC19.17■□□□□ 0.66
TNFP01375 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 FITM1-202ENST00000559294 800 ntBASIC19.17■□□□□ 0.66
TNFP01375 HLA-A-209ENST00000638375 975 ntBASIC19.17■□□□□ 0.66
TNFP01375 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TNFP01375 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TNFP01375 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
TNFP01375 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TNFP01375 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TNFP01375 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.16■□□□□ 0.66
TNFP01375 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
TNFP01375 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.16■□□□□ 0.66
TNFP01375 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 B3GAT3P1-201ENST00000471720 806 ntBASIC19.16■□□□□ 0.66
TNFP01375 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
TNFP01375 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
TNFP01375 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TNFP01375 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TNFP01375 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.16■□□□□ 0.66
TNFP01375 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.16■□□□□ 0.66
TNFP01375 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms