Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.99■□□□□ 0.63
CLDN9O95484 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.99■□□□□ 0.63
CLDN9O95484 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.99■□□□□ 0.63
CLDN9O95484 AC006557.6-201ENST00000623071 864 ntBASIC18.99■□□□□ 0.63
CLDN9O95484 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLDN9O95484 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.99■□□□□ 0.63
CLDN9O95484 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN9O95484 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN9O95484 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CLDN9O95484 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.98■□□□□ 0.63
CLDN9O95484 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.98■□□□□ 0.63
CLDN9O95484 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
CLDN9O95484 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 MYC-209ENST00000641252 345 ntBASIC18.98■□□□□ 0.63
CLDN9O95484 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.98■□□□□ 0.63
CLDN9O95484 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CLDN9O95484 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLDN9O95484 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN9O95484 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CLDN9O95484 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN9O95484 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN9O95484 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 HLA-B-256ENST00000639848 1089 ntBASIC18.97■□□□□ 0.63
CLDN9O95484 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.97■□□□□ 0.63
CLDN9O95484 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CLDN9O95484 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.97■□□□□ 0.63
CLDN9O95484 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
CLDN9O95484 AC092368.3-202ENST00000574180 1591 ntBASIC18.97■□□□□ 0.63
CLDN9O95484 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CLDN9O95484 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CLDN9O95484 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
CLDN9O95484 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.96■□□□□ 0.63
CLDN9O95484 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CLDN9O95484 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
CLDN9O95484 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CLDN9O95484 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
CLDN9O95484 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CLDN9O95484 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN9O95484 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.96■□□□□ 0.63
CLDN9O95484 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 Z82202.1-201ENST00000623446 1880 ntBASIC18.96■□□□□ 0.63
CLDN9O95484 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.96■□□□□ 0.63
CLDN9O95484 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CLDN9O95484 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.95■□□□□ 0.62
CLDN9O95484 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN9O95484 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLDN9O95484 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.95■□□□□ 0.62
CLDN9O95484 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CLDN9O95484 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.95■□□□□ 0.62
CLDN9O95484 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.95■□□□□ 0.62
CLDN9O95484 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.95■□□□□ 0.62
CLDN9O95484 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.95■□□□□ 0.62
CLDN9O95484 AL138781.1-201ENST00000566567 1274 ntBASIC18.95■□□□□ 0.62
CLDN9O95484 AL109923.1-201ENST00000618799 583 ntBASIC18.95■□□□□ 0.62
CLDN9O95484 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CLDN9O95484 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CLDN9O95484 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms