Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 AC020907.5-201ENST00000624372 1936 ntBASIC16■□□□□ 0.15
TRAV40A0A0B4J280 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
TRAV40A0A0B4J280 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 UNC93B2-201ENST00000285383 730 ntBASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 RBM17P1-201ENST00000453646 1190 ntBASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AC073314.1-201ENST00000568729 2216 ntBASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
TRAV40A0A0B4J280 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 MMP23A-201ENST00000234610 1017 ntBASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 KRT18P16-201ENST00000510337 1294 ntBASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 AP000525.1-201ENST00000608286 694 ntBASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
TRAV40A0A0B4J280 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
TRAV40A0A0B4J280 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms