Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AP000797.2-201ENST00000475768 606 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 RPL21P129-201ENST00000491732 478 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 PPM1AP1-201ENST00000502740 1135 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 snoU109.5-201ENST00000516231 132 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AL161616.1-201ENST00000611867 286 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC068769.1-201ENST00000474767 2426 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 MIPEPP2-201ENST00000422560 1819 ntBASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
SHANK3Q9BYB0 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 RNA5SP428-201ENST00000365129 132 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 RPL7P11-201ENST00000437586 658 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 RPL36AP15-201ENST00000444514 266 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 NDUFA5P8-201ENST00000449019 346 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 IGKV2D-10-201ENST00000520194 281 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 AC026688.1-201ENST00000520639 1168 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 GLRXP2-201ENST00000555594 321 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 MIR3160-1-201ENST00000577972 85 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 AC009597.2-201ENST00000604659 592 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 AC099494.2-201ENST00000623371 978 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC6.9□□□□□ -1.3
SHANK3Q9BYB0 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 CASC19-260ENST00000641828 2001 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 RPS4XP16-201ENST00000427198 791 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AC122718.1-201ENST00000439448 744 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 FAM133DP-201ENST00000464802 691 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 RPL23AP72-201ENST00000492447 435 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AC011453.2-201ENST00000603737 729 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AC008814.1-201ENST00000603797 406 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 AL162431.4-201ENST00000604674 411 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 EIF3FP1-201ENST00000613970 806 ntBASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
SHANK3Q9BYB0 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AL359715.3-201ENST00000569267 2123 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 RPL10P10-201ENST00000403509 664 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 RNF10P1-201ENST00000418589 369 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AL389915.1-201ENST00000422463 466 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 RN7SL188P-201ENST00000469842 285 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 RN7SL41P-201ENST00000476144 297 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AC005000.1-201ENST00000536192 288 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 AC010857.1-201ENST00000606398 594 ntBASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
SHANK3Q9BYB0 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.88□□□□□ -1.31
SHANK3Q9BYB0 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
SHANK3Q9BYB0 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms