Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC112191.2-201ENST00000522428 333 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 IGKV3D-34-201ENST00000522638 302 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC136777.2-201ENST00000522979 358 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS35Q96QK1 KARSP1-201ENST00000451871 1752 ntBASIC5.6□□□□□ -1.51
VPS35Q96QK1 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS35Q96QK1 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 RNA5SP453-201ENST00000362503 119 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 SNORA5.1-201ENST00000384275 131 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 RN7SKP293-201ENST00000411389 296 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AL121878.1-201ENST00000418638 859 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 TMEM183AP1-205ENST00000432739 290 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC006335.2-201ENST00000437993 330 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 RPL36AP39-201ENST00000445859 318 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 ATP5LP5-201ENST00000483050 299 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC074087.1-201ENST00000512059 724 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 IGLV3-24-201ENST00000517477 197 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC137627.1-201ENST00000545761 289 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AL049872.1-201ENST00000556323 322 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC234775.3-201ENST00000564612 656 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 MIR4505-201ENST00000582238 73 ntBASIC5.59□□□□□ -1.51
VPS35Q96QK1 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS35Q96QK1 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
VPS35Q96QK1 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
VPS35Q96QK1 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
VPS35Q96QK1 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS35Q96QK1 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AC114786.1-201ENST00000512892 1415 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 BCORP1-203ENST00000513194 5093 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 OR10T1P-201ENST00000424327 947 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AP000281.1-201ENST00000444036 316 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 EEF1B2P6-201ENST00000445713 673 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 GAPDHP14-201ENST00000450472 937 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 SETP20-201ENST00000457046 852 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 AP002371.1-201ENST00000463604 433 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 KCTD9P6-201ENST00000522306 950 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 PMS2P3-207ENST00000529061 717 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AC020978.7-201ENST00000575953 1187 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 PPATP2-201ENST00000605635 508 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 RN7SL787P-201ENST00000613000 284 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AC008691.1-209ENST00000642094 814 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 PWAR1-201ENST00000624188 2414 ntBASIC5.58□□□□□ -1.52
VPS35Q96QK1 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms