Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC068870.1-201ENST00000563737 2455 ntBASIC5.65□□□□□ -1.51
VPS39Q96JC1 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS39Q96JC1 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS39Q96JC1 SAMMSON-213ENST00000641336 1521 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AL159987.1-201ENST00000347911 293 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 RNA5SP273-201ENST00000362484 113 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 SNORA70.6-201ENST00000383934 134 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 RPS27AP6-201ENST00000427962 448 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 NDUFS5P5-201ENST00000437256 321 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AMYP1-201ENST00000440059 1023 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC090602.1-201ENST00000469695 252 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 RN7SL170P-201ENST00000487098 295 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 RNA5SP473-201ENST00000516402 125 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 RN7SKP253-201ENST00000516424 309 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC021678.3-201ENST00000517893 476 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC022616.2-201ENST00000523185 300 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 OR4A17P-201ENST00000526032 904 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC122688.1-201ENST00000541494 223 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC079905.1-201ENST00000549280 475 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC107958.1-201ENST00000556576 290 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC010487.1-201ENST00000594408 1172 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
VPS39Q96JC1 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC109446.4-201ENST00000623235 2755 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 AC093775.1-201ENST00000624154 1868 ntBASIC5.64□□□□□ -1.51
VPS39Q96JC1 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
VPS39Q96JC1 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 ADAM24P-201ENST00000398655 2101 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 U3.28-201ENST00000391249 210 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AL133482.1-201ENST00000415988 498 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC069154.1-201ENST00000432914 542 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 NANOGP9-201ENST00000439890 892 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC009120.1-201ENST00000493458 473 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 SCARNA6.1-201ENST00000516989 238 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AL122125.1-201ENST00000616999 600 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
VPS39Q96JC1 MUC2-202ENST00000613187 4845 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.63□□□□□ -1.51
VPS39Q96JC1 PWAR1-201ENST00000624188 2414 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC006206.1-201ENST00000544842 3387 ntBASIC5.63□□□□□ -1.51
VPS39Q96JC1 AC018809.2-201ENST00000602436 3823 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms