Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC117434.1-201ENST00000419971 836 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 UBE2V2P1-201ENST00000434717 398 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 FMO7P-201ENST00000436045 768 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RN7SL329P-201ENST00000467740 299 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RN7SL826P-201ENST00000479724 288 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC093763.2-201ENST00000505334 1223 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC147055.3-201ENST00000510547 851 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RN7SKP67-201ENST00000515905 235 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RN7SKP34-201ENST00000516142 244 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AP005901.4-201ENST00000577336 569 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 FKBP1AP1-201ENST00000594588 318 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AL159169.2-201ENST00000610061 1269 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RPSAP73-201ENST00000614820 330 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC114786.1-201ENST00000512892 1415 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC018628.1-201ENST00000624147 3819 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 MTCO1P22-201ENST00000604619 1360 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 MIR585-201ENST00000384887 94 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 SEPT7P8-201ENST00000413308 775 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL772161.1-201ENST00000439130 476 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC015983.1-201ENST00000441577 373 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 MTCYBP14-201ENST00000457471 715 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC087672.1-201ENST00000479876 766 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL035690.1-201ENST00000490892 383 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 HIGD1AP14-201ENST00000507617 282 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC092593.2-201ENST00000513866 913 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AP002981.1-201ENST00000517692 975 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC096996.1-201ENST00000563813 325 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AL390726.5-202ENST00000564800 256 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 AP002512.4-202ENST00000641599 4530 ntBASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDDC3Q8N4P3 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 PABPC1P6-201ENST00000445594 1829 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 RNA5SP507-201ENST00000363603 121 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC113412.1-201ENST00000425840 504 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC012075.1-201ENST00000436549 580 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL450996.1-201ENST00000445574 1202 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms