Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC079395.1-201ENST00000510981 262 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC109445.1-201ENST00000512356 383 ntBASIC6.5□□□□□ -1.37
RNF4P78317 RN7SKP11-201ENST00000517018 287 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 SMARCE1P4-201ENST00000523647 241 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC130366.1-201ENST00000526505 1192 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC6.5□□□□□ -1.37
RNF4P78317 AC025260.1-201ENST00000548858 430 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 NIFKP8-201ENST00000560500 874 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC136619.2-201ENST00000563361 631 ntBASIC6.5□□□□□ -1.37
RNF4P78317 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.5□□□□□ -1.37
RNF4P78317 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 AC011447.2-201ENST00000592921 283 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AP001267.4-201ENST00000602598 545 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AP003973.1-201ENST00000604639 691 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 PCMTD1P7-201ENST00000634506 357 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC127502.3-201ENST00000636170 1206 ntBASIC6.5□□□□□ -1.37
RNF4P78317 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 MAPK10-287ENST00000641217 3037 ntBASIC6.5□□□□□ -1.37
RNF4P78317 SPATA31C2-201ENST00000324915 3777 ntBASIC6.49□□□□□ -1.37
RNF4P78317 FAM221B-203ENST00000423537 2931 ntAPPRIS P2 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 SLC14A1-208ENST00000586142 2846 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 AC092725.2-201ENST00000567658 1389 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AL033543.1-201ENST00000623440 13454 ntBASIC6.49□□□□□ -1.37
RNF4P78317 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC6.49□□□□□ -1.37
RNF4P78317 PFKFB1-201ENST00000374992 1156 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 MIR99A-201ENST00000384906 81 ntBASIC6.49□□□□□ -1.37
RNF4P78317 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 RNU6-575P-201ENST00000411326 105 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
RNF4P78317 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 AC007365.2-201ENST00000428806 458 ntBASIC6.49□□□□□ -1.37
RNF4P78317 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 NDUFS5P5-201ENST00000437256 321 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AL138787.1-202ENST00000437804 898 ntBASIC6.49□□□□□ -1.37
RNF4P78317 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.49□□□□□ -1.37
RNF4P78317 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 RHEBP2-201ENST00000450289 600 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC027673.1-201ENST00000456245 405 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC010878.1-201ENST00000456500 1047 ntBASIC6.49□□□□□ -1.37
RNF4P78317 TPT1P7-201ENST00000458300 517 ntBASIC6.49□□□□□ -1.37
RNF4P78317 PGBD4P1-201ENST00000473644 407 ntBASIC6.49□□□□□ -1.37
RNF4P78317 RN7SL868P-201ENST00000485915 303 ntBASIC6.49□□□□□ -1.37
RNF4P78317 OR11I1P-201ENST00000486033 954 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC104108.1-201ENST00000509930 412 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC010285.3-201ENST00000511668 676 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC017007.1-201ENST00000511960 415 ntBASIC6.49□□□□□ -1.37
RNF4P78317 SETP21-201ENST00000514799 892 ntBASIC6.49□□□□□ -1.37
RNF4P78317 RNU6-1178P-201ENST00000516674 107 ntBASIC6.49□□□□□ -1.37
RNF4P78317 IGLC4-201ENST00000517690 248 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 IGLVV-66-201ENST00000523818 341 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.49□□□□□ -1.37
RNF4P78317 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 ACTG1P15-201ENST00000570019 1063 ntBASIC6.49□□□□□ -1.37
RNF4P78317 MTCO3P24-201ENST00000572729 782 ntBASIC6.49□□□□□ -1.37
RNF4P78317 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC6.49□□□□□ -1.37
RNF4P78317 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.49□□□□□ -1.37
RNF4P78317 MIR4428-201ENST00000584884 73 ntBASIC6.49□□□□□ -1.37
RNF4P78317 OR7E19P-202ENST00000589942 844 ntBASIC6.49□□□□□ -1.37
RNF4P78317 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms