Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC005377.1-201ENST00000605126 456 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 AC073869.10-201ENST00000642016 354 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.94□□□□□ -1.3
COL18A1P39060 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.93□□□□□ -1.3
COL18A1P39060 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 RNU1-74P-201ENST00000384108 171 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 MIR600-201ENST00000385007 98 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.93□□□□□ -1.3
COL18A1P39060 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.93□□□□□ -1.3
COL18A1P39060 BX323845.1-201ENST00000432417 179 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.93□□□□□ -1.3
COL18A1P39060 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.93□□□□□ -1.3
COL18A1P39060 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 NOP56P2-201ENST00000447491 769 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.93□□□□□ -1.3
COL18A1P39060 RN7SL814P-201ENST00000487715 300 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.93□□□□□ -1.3
COL18A1P39060 GLUD1P3-202ENST00000508551 200 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.93□□□□□ -1.3
COL18A1P39060 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 AL356317.1-201ENST00000396110 1436 ntBASIC6.93□□□□□ -1.3
COL18A1P39060 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
COL18A1P39060 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.93□□□□□ -1.3
COL18A1P39060 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL18A1P39060 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
COL18A1P39060 RPL11P3-201ENST00000395256 523 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 HMGN2P25-201ENST00000486956 268 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 FTH1P8-201ENST00000498161 514 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.92□□□□□ -1.3
COL18A1P39060 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.92□□□□□ -1.3
COL18A1P39060 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.92□□□□□ -1.3
COL18A1P39060 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 SPATA31C1-201ENST00000420021 3895 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC6.92□□□□□ -1.3
COL18A1P39060 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC6.92□□□□□ -1.3
COL18A1P39060 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.92□□□□□ -1.3
COL18A1P39060 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 HMGB3P7-201ENST00000400214 611 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.92□□□□□ -1.3
COL18A1P39060 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.92□□□□□ -1.3
COL18A1P39060 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.92□□□□□ -1.3
COL18A1P39060 AC063943.1-201ENST00000465434 453 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.92□□□□□ -1.3
COL18A1P39060 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.92□□□□□ -1.3
COL18A1P39060 AC011487.3-201ENST00000593607 453 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 AC104687.2-201ENST00000604442 342 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
COL18A1P39060 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
COL18A1P39060 AC144833.1-201ENST00000567953 4089 ntBASIC6.92□□□□□ -1.3
COL18A1P39060 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL18A1P39060 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.91□□□□□ -1.3
COL18A1P39060 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.91□□□□□ -1.3
COL18A1P39060 AL354714.3-201ENST00000447284 493 ntBASIC6.91□□□□□ -1.3
COL18A1P39060 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.91□□□□□ -1.3
COL18A1P39060 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.91□□□□□ -1.3
COL18A1P39060 MRPS33P2-201ENST00000507850 322 ntBASIC6.91□□□□□ -1.3
COL18A1P39060 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.91□□□□□ -1.3
COL18A1P39060 AC011453.2-201ENST00000603737 729 ntBASIC6.91□□□□□ -1.3
COL18A1P39060 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.91□□□□□ -1.3
COL18A1P39060 BX284613.1-201ENST00000452221 1641 ntBASIC6.91□□□□□ -1.3
COL18A1P39060 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL18A1P39060 SDAD1P1-202ENST00000524156 2051 ntBASIC6.91□□□□□ -1.3
COL18A1P39060 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL18A1P39060 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL18A1P39060 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL18A1P39060 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL18A1P39060 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms