Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.26□□□□□ -1.73
HLA-DMBP28068 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 KARSP1-201ENST00000451871 1752 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL358178.1-201ENST00000407698 397 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 RNA5SP178-201ENST00000410380 128 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC104843.2-201ENST00000427666 297 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 RPS4XP12-201ENST00000461747 709 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 PPIAP19-201ENST00000486414 492 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 DUTP7-201ENST00000507982 486 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 HMGN2P36-201ENST00000529541 409 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC122688.1-201ENST00000541494 223 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 MIR4260-201ENST00000583107 67 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC006272.2-201ENST00000594725 163 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 COX6CP7-201ENST00000597056 208 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC127024.6-201ENST00000621598 424 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 OR8G3P-202ENST00000641572 1255 ntBASIC4.25□□□□□ -1.73
HLA-DMBP28068 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
HLA-DMBP28068 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HLA-DMBP28068 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AP001029.2-203ENST00000589795 4910 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC106872.5-201ENST00000508856 1416 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 TMSB4XP4-201ENST00000323496 618 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 SNORA17A-201ENST00000391185 133 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 MTND6P12-201ENST00000428247 522 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 FTLP19-201ENST00000433300 394 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 NANOGP9-201ENST00000439890 892 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 LINC02210-201ENST00000444561 288 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AL161636.2-201ENST00000445179 927 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AL445665.1-202ENST00000452436 324 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 OR2AF1P-201ENST00000454899 889 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 NXT1P1-201ENST00000458481 316 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 SNORD125-201ENST00000459538 96 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 RN7SL570P-201ENST00000484405 292 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC074255.1-201ENST00000511259 501 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC112191.2-201ENST00000522428 333 ntBASIC4.24□□□□□ -1.73
HLA-DMBP28068 MAL2-207ENST00000522828 603 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.24□□□□□ -1.73
HLA-DMBP28068 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 179 ms