Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 AC017078.1-201ENST00000416146 368 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 MARK2P12-201ENST00000420129 585 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 AC007161.1-204ENST00000423039 460 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.49□□□□□ -1.53
SHOX2O60902 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
SHOX2O60902 RPL35AP21-201ENST00000437667 333 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.49□□□□□ -1.53
SHOX2O60902 H3F3AP5-201ENST00000475267 429 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 AC098818.1-201ENST00000478593 252 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 RN7SL447P-201ENST00000494711 245 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 ARL4AP1-201ENST00000503220 705 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.49□□□□□ -1.53
SHOX2O60902 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC5.49□□□□□ -1.53
SHOX2O60902 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.49□□□□□ -1.53
SHOX2O60902 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 AC244107.2-201ENST00000611773 76 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 AC025574.2-201ENST00000615621 514 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SHOX2O60902 MTCO1P28-201ENST00000574177 1528 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SHOX2O60902 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.48□□□□□ -1.53
SHOX2O60902 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.48□□□□□ -1.53
SHOX2O60902 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.48□□□□□ -1.53
SHOX2O60902 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SHOX2O60902 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SHOX2O60902 RN7SKP108-201ENST00000411367 328 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.48□□□□□ -1.53
SHOX2O60902 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.48□□□□□ -1.53
SHOX2O60902 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.48□□□□□ -1.53
SHOX2O60902 AC090018.1-201ENST00000434369 367 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AC092447.2-201ENST00000435487 669 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.48□□□□□ -1.53
SHOX2O60902 RPL12P49-201ENST00000441100 121 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC5.48□□□□□ -1.53
SHOX2O60902 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.48□□□□□ -1.53
SHOX2O60902 AL445991.1-201ENST00000450381 475 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AL445433.1-201ENST00000457507 257 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 RN7SL570P-201ENST00000484405 292 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AC090568.1-201ENST00000509499 856 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 SCARNA21.2-201ENST00000516600 166 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC5.48□□□□□ -1.53
SHOX2O60902 AC093591.2-201ENST00000565254 3843 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.48□□□□□ -1.53
SHOX2O60902 AC073333.2-201ENST00000603589 769 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 AC011891.2-201ENST00000604949 397 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SHOX2O60902 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SHOX2O60902 CDY3P-201ENST00000454543 1618 ntBASIC5.48□□□□□ -1.53
SHOX2O60902 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHOX2O60902 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.47□□□□□ -1.53
SHOX2O60902 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 RNU1-134P-201ENST00000362935 165 ntBASIC5.47□□□□□ -1.53
SHOX2O60902 RN7SKP292-201ENST00000365522 317 ntBASIC5.47□□□□□ -1.53
SHOX2O60902 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.47□□□□□ -1.53
SHOX2O60902 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHOX2O60902 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 AC124944.2-201ENST00000429866 1242 ntBASIC5.47□□□□□ -1.53
SHOX2O60902 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.47□□□□□ -1.53
SHOX2O60902 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.47□□□□□ -1.53
SHOX2O60902 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.47□□□□□ -1.53
SHOX2O60902 RPL37P23-201ENST00000492641 294 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms