Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MORF4-201ENST00000447135 971 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 TCEAL4P1-201ENST00000453620 588 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RPL34P22-201ENST00000468193 318 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MTCO3P38-201ENST00000468910 766 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RN7SL58P-201ENST00000473445 294 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RPL7AP56-201ENST00000476420 791 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 RN7SKP244-201ENST00000516513 307 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC103681.2-201ENST00000527450 567 ntTSL 4 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MED28P5-201ENST00000528254 438 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 OR6M2P-201ENST00000529831 871 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC006120.1-201ENST00000579375 546 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC010327.2-201ENST00000587647 488 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC008687.2-201ENST00000597865 520 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MIR7162-201ENST00000611134 69 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AL359535.1-201ENST00000612100 1087 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC243830.2-201ENST00000618067 630 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC022743.1-201ENST00000624990 664 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 EEF1A1P26-201ENST00000458319 1363 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC022306.1-201ENST00000560489 1562 ntBASIC5.75□□□□□ -1.49
CCDC140Q96MF4 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC140Q96MF4 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL161912.4-201ENST00000623889 2468 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 ZC3H13-201ENST00000242848 8018 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 OR4G2P-201ENST00000328113 903 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SNRPEP3-201ENST00000338402 276 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RNU6-657P-201ENST00000383904 107 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC113608.1-201ENST00000398740 305 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC003045.1-201ENST00000398779 713 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RPS24P12-201ENST00000402084 394 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC002524.1-201ENST00000411687 547 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 HMGN1P14-201ENST00000412459 517 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC009237.9-201ENST00000414800 347 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AL513325.1-201ENST00000417716 1034 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC127537.1-201ENST00000418183 748 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RPS27AP14-201ENST00000422868 454 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 KRTAP3-4P-201ENST00000430780 280 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC010881.1-201ENST00000433830 235 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 UBE2V1P8-201ENST00000437166 265 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC244505.5-201ENST00000443639 207 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 TRMT2B-AS1-201ENST00000443801 205 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 HIST1H2APS6-201ENST00000448609 364 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RPS23P9-201ENST00000448848 438 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 PAXBP1P1-201ENST00000449315 447 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC140Q96MF4 AC013429.1-201ENST00000456604 422 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 RPS15AP1-201ENST00000457423 391 ntBASIC5.74□□□□□ -1.49
CCDC140Q96MF4 GLRXP3-201ENST00000470810 321 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms