Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 RN7SL188P-201ENST00000469842 285 ntBASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 AC147055.3-201ENST00000510547 851 ntBASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 AL359513.1-201ENST00000614364 557 ntBASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SHROOM3Q8TF72 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 CRIP1P1-201ENST00000427567 185 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 TAAR4P-201ENST00000454843 1039 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SCARNA20.4-201ENST00000516969 131 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SETP3-201ENST00000581726 813 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AL049539.1-201ENST00000611964 459 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AL590762.4-201ENST00000425885 253 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC009963.4-201ENST00000448535 339 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC004815.1-201ENST00000484185 331 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SCARNA9-201ENST00000530422 353 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 OR5D15P-201ENST00000531671 942 ntBASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.66□□□□□ -1.5
SHROOM3Q8TF72 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 AC013268.3-201ENST00000262716 2324 ntBASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SHROOM3Q8TF72 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 RN7SKP28-201ENST00000364770 305 ntBASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 SNORA11-201ENST00000408789 128 ntBASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 RPL10P14-201ENST00000565265 298 ntBASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 AC005840.5-201ENST00000619166 599 ntBASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.65□□□□□ -1.51
SHROOM3Q8TF72 EPS15P1-202ENST00000459691 2071 ntBASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 CYCSP6-201ENST00000434498 302 ntBASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 AC012075.1-201ENST00000436549 580 ntBASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 MTND2P40-201ENST00000436718 841 ntBASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 AC004453.1-201ENST00000487895 408 ntBASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.64□□□□□ -1.51
SHROOM3Q8TF72 SEPT10P1-201ENST00000517342 1162 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms