Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC093270.2-201ENST00000486157 792 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RNA5SP92-201ENST00000516437 110 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC139365.2-201ENST00000517972 253 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 HAUS8P1-201ENST00000549005 542 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC093297.3-201ENST00000607056 2517 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC007842.1-201ENST00000597336 2039 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AP004607.3-201ENST00000530354 3915 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 MFSD8-219ENST00000641228 2559 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 SRRM1P3-201ENST00000426911 2678 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 HSPD1P7-201ENST00000447985 1686 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AL159987.1-201ENST00000347911 293 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 RN7SKP216-201ENST00000411050 312 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 RN7SL72P-201ENST00000460697 269 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC128716.1-201ENST00000475129 166 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 NDUFA5P12-201ENST00000503796 343 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 MRPS16P1-201ENST00000523462 412 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC007346.2-201ENST00000564816 892 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC010615.3-201ENST00000597319 394 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AL138960.1-201ENST00000613838 513 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC007204.2-201ENST00000615022 616 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 CASC19-264ENST00000641912 1184 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 MRE11P1-201ENST00000464884 2127 ntBASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
HDDC3Q8N4P3 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AL592429.1-201ENST00000403909 1473 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 YES1P1-201ENST00000418510 1628 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 Y_RNA.62-201ENST00000362840 99 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 MIR223-201ENST00000385204 110 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AL596448.1-201ENST00000415024 392 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 RAB9AP4-201ENST00000415230 609 ntBASIC5.79□□□□□ -1.48
HDDC3Q8N4P3 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms