Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 RPS23P2-201ENST00000463671 415 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 RN7SL197P-201ENST00000466981 299 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 UBFD1P1-201ENST00000473259 814 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC090888.3-201ENST00000558917 509 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 DPRXP4-201ENST00000578053 568 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AP005262.1-201ENST00000582646 997 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC100767.2-201ENST00000604840 693 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 RN7SL544P-201ENST00000617232 284 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 AL035661.1-201ENST00000620459 1144 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 RN7SL763P-201ENST00000620922 284 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC106872.5-201ENST00000508856 1416 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC018809.2-201ENST00000602436 3823 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC007842.1-201ENST00000597336 2039 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AL158152.1-201ENST00000602652 1435 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 MIR375-201ENST00000362103 64 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 MIR130A-201ENST00000385274 89 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC002069.1-201ENST00000429649 1159 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 PCNPP2-201ENST00000441651 455 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC073072.2-201ENST00000447425 348 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 RPS7P6-201ENST00000485777 579 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC073610.1-201ENST00000489971 396 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC015802.2-201ENST00000589690 189 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 NANOGP3-201ENST00000605855 286 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 BNIP3P41-202ENST00000616656 861 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC104260.2-201ENST00000623551 3497 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 TET1P1-201ENST00000426627 2301 ntBASIC5.01□□□□□ -1.61
SKA3Q8IX90 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SKA3Q8IX90 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SKA3Q8IX90 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5□□□□□ -1.61
SKA3Q8IX90 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SKA3Q8IX90 HMGB1P20-201ENST00000402555 677 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 RN7SKP279-201ENST00000411383 298 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 EEF1B2P8-201ENST00000414101 671 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5□□□□□ -1.61
SKA3Q8IX90 AKR1B10P1-201ENST00000425765 942 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AC127526.2-201ENST00000426436 775 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AL022331.1-201ENST00000429025 477 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 AL445665.1-202ENST00000452436 324 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 CBX1P2-201ENST00000453841 458 ntBASIC5□□□□□ -1.61
SKA3Q8IX90 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5□□□□□ -1.61
SKA3Q8IX90 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms