Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 OR4A6P-201ENST00000534364 970 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 MIR4270-201ENST00000581799 70 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AP000346.3-201ENST00000622821 210 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 NUTF2P7-201ENST00000453086 375 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC002075.1-201ENST00000457396 676 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC078899.1-201ENST00000521432 1185 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC009117.1-201ENST00000563948 554 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 HIRAP1-201ENST00000605318 787 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AL034549.2-201ENST00000618285 3373 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC073342.2-201ENST00000595842 1800 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 INTS6P1-201ENST00000504674 2530 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 RNU1-59P-201ENST00000364829 162 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 COX6B1P1-201ENST00000415962 213 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC019050.1-201ENST00000418508 492 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC245028.1-201ENST00000423259 256 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 PDCL3P4-201ENST00000489621 720 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 HMGB1P44-201ENST00000508597 572 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 EIF3FP1-201ENST00000613970 806 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 U1.25-201ENST00000614085 162 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 U1.34-201ENST00000618578 162 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 U1.31-201ENST00000620022 160 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 AP004607.3-201ENST00000530354 3915 ntBASIC6.7□□□□□ -1.34
CCDC88AQ3V6T2 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 MT-RNR2-201ENST00000387347 1559 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 PWAR1-201ENST00000624188 2414 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 RNA5SP123-201ENST00000363244 119 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 C4BPAP2-201ENST00000428434 478 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AL161722.1-201ENST00000446972 1032 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AL672138.1-201ENST00000450604 1015 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 GTF2F2P1-201ENST00000511083 675 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 RN7SKP253-201ENST00000516424 309 ntBASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC88AQ3V6T2 AC005084.1-201ENST00000605160 304 ntBASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms