Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 OR6K4P-201ENST00000423179 955 ntBASIC6.51□□□□□ -1.37
RNF4P78317 SNX19-202ENST00000426933 888 ntTSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 AL139415.2-201ENST00000431968 163 ntBASIC6.51□□□□□ -1.37
RNF4P78317 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 AC009518.3-201ENST00000438972 253 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AL356133.1-201ENST00000444762 372 ntBASIC6.51□□□□□ -1.37
RNF4P78317 SLAMF6P1-201ENST00000451067 602 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 RANP1-206ENST00000455094 651 ntBASIC6.51□□□□□ -1.37
RNF4P78317 PSAT1P4-201ENST00000466500 526 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC6.51□□□□□ -1.37
RNF4P78317 GTF2F2P1-201ENST00000511083 675 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC6.51□□□□□ -1.37
RNF4P78317 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC6.51□□□□□ -1.37
RNF4P78317 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC6.51□□□□□ -1.37
RNF4P78317 AC004825.1-201ENST00000555068 586 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC026458.1-201ENST00000564330 438 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC087481.2-201ENST00000565492 330 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 AC023827.2-201ENST00000566880 1061 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.51□□□□□ -1.37
RNF4P78317 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.51□□□□□ -1.37
RNF4P78317 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 MIR6883-201ENST00000614952 78 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AC005753.1-201ENST00000623837 618 ntBASIC6.51□□□□□ -1.37
RNF4P78317 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
RNF4P78317 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
RNF4P78317 AL596275.2-208ENST00000641192 594 ntBASIC6.51□□□□□ -1.37
RNF4P78317 AL596275.2-203ENST00000641951 371 ntBASIC6.51□□□□□ -1.37
RNF4P78317 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 C1D-202ENST00000407324 1379 ntTSL 3 BASIC6.51□□□□□ -1.37
RNF4P78317 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
RNF4P78317 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
RNF4P78317 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.51□□□□□ -1.37
RNF4P78317 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 CDY19P-201ENST00000411668 1613 ntBASIC6.5□□□□□ -1.37
RNF4P78317 CDY18P-201ENST00000438294 1609 ntBASIC6.5□□□□□ -1.37
RNF4P78317 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 OR2A3P-202ENST00000641249 1776 ntBASIC6.5□□□□□ -1.37
RNF4P78317 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 RNU5E-4P-201ENST00000364931 120 ntBASIC6.5□□□□□ -1.37
RNF4P78317 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
RNF4P78317 RNA5SP105-201ENST00000391123 113 ntBASIC6.5□□□□□ -1.37
RNF4P78317 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC6.5□□□□□ -1.37
RNF4P78317 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 OFD1P2Y-201ENST00000421895 1149 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 NANOGP4-201ENST00000427230 913 ntBASIC6.5□□□□□ -1.37
RNF4P78317 PUDPP2-201ENST00000431423 643 ntBASIC6.5□□□□□ -1.37
RNF4P78317 PHB2P1-201ENST00000434943 890 ntBASIC6.5□□□□□ -1.37
RNF4P78317 LDHAP2-201ENST00000437325 985 ntBASIC6.5□□□□□ -1.37
RNF4P78317 RPS10P14-201ENST00000440748 502 ntBASIC6.5□□□□□ -1.37
RNF4P78317 USP9YP29-201ENST00000445112 563 ntBASIC6.5□□□□□ -1.37
RNF4P78317 HMGB1P16-201ENST00000447155 540 ntBASIC6.5□□□□□ -1.37
RNF4P78317 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC6.5□□□□□ -1.37
RNF4P78317 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.5□□□□□ -1.37
RNF4P78317 RPL34P34-201ENST00000465389 354 ntBASIC6.5□□□□□ -1.37
RNF4P78317 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
RNF4P78317 AC109486.1-201ENST00000486833 374 ntBASIC6.5□□□□□ -1.37
RNF4P78317 MTAPP1-201ENST00000489154 819 ntBASIC6.5□□□□□ -1.37
RNF4P78317 MTND6P8-201ENST00000503471 522 ntBASIC6.5□□□□□ -1.37
RNF4P78317 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC6.5□□□□□ -1.37
RNF4P78317 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.5□□□□□ -1.37
RNF4P78317 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms