Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXA1P55317 MIR4660-201ENST00000583549 74 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.22□□□□□ -1.57
FOXA1P55317 AC027243.2-201ENST00000602530 724 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 AC073136.1-201ENST00000449426 2884 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 BRAFP1-201ENST00000445336 2703 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AC006600.2-201ENST00000624834 2506 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
FOXA1P55317 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXA1P55317 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.21□□□□□ -1.57
FOXA1P55317 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC5.21□□□□□ -1.58
FOXA1P55317 AL450345.1-202ENST00000605741 3881 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 LINC01963-201ENST00000562038 3148 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 U3.7-201ENST00000363668 216 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.21□□□□□ -1.58
FOXA1P55317 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
FOXA1P55317 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.21□□□□□ -1.58
FOXA1P55317 AL596448.1-201ENST00000415024 392 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.21□□□□□ -1.58
FOXA1P55317 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.21□□□□□ -1.58
FOXA1P55317 PRPF38AP1-201ENST00000451976 933 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AL445665.1-202ENST00000452436 324 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 LDHBP2-201ENST00000456969 1005 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC019084.1-201ENST00000457337 432 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 MTND6P2-201ENST00000512226 524 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC098976.1-201ENST00000513014 541 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 EIF3KP3-201ENST00000514461 639 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.21□□□□□ -1.58
FOXA1P55317 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.21□□□□□ -1.58
FOXA1P55317 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.21□□□□□ -1.58
FOXA1P55317 AL359219.2-201ENST00000555184 348 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 PRPF19P1-201ENST00000584766 898 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.21□□□□□ -1.58
FOXA1P55317 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXA1P55317 AC079315.1-201ENST00000602952 623 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AL499605.1-201ENST00000604628 403 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AL359742.1-201ENST00000622497 540 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AC091932.2-201ENST00000623014 291 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AP003400.3-201ENST00000624904 346 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.21□□□□□ -1.58
FOXA1P55317 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 AC079298.1-201ENST00000625026 1619 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
FOXA1P55317 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
FOXA1P55317 GVINP1-202ENST00000531871 7271 ntBASIC5.21□□□□□ -1.58
FOXA1P55317 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
FOXA1P55317 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.2□□□□□ -1.58
FOXA1P55317 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.2□□□□□ -1.58
FOXA1P55317 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.2□□□□□ -1.58
FOXA1P55317 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.2□□□□□ -1.58
FOXA1P55317 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
FOXA1P55317 MIR621-201ENST00000384919 96 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 OR6E1P-201ENST00000414424 923 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.2□□□□□ -1.58
FOXA1P55317 Z84478.1-201ENST00000438230 1219 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
FOXA1P55317 AP000797.2-201ENST00000475768 606 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AC058823.1-201ENST00000485315 474 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 OR51A1P-201ENST00000511110 946 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 CYCSP22-201ENST00000517555 339 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.2□□□□□ -1.58
FOXA1P55317 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.2□□□□□ -1.58
FOXA1P55317 TOMM20P1-201ENST00000534518 427 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.2□□□□□ -1.58
FOXA1P55317 AC079600.1-201ENST00000550326 297 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.2□□□□□ -1.58
FOXA1P55317 AC107958.1-201ENST00000556576 290 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 NMNAT1P5-201ENST00000559657 841 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.2□□□□□ -1.58
FOXA1P55317 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
FOXA1P55317 RN7SL356P-201ENST00000582228 248 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.2□□□□□ -1.58
FOXA1P55317 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.2□□□□□ -1.58
FOXA1P55317 AC008115.3-201ENST00000614874 549 ntBASIC5.2□□□□□ -1.58
FOXA1P55317 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms