Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
CUX1P39880 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC8.94□□□□□ -0.98
CUX1P39880 MIR1182-201ENST00000408363 97 ntBASIC8.94□□□□□ -0.98
CUX1P39880 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC8.94□□□□□ -0.98
CUX1P39880 C1GALT1P3-201ENST00000522049 819 ntBASIC8.94□□□□□ -0.98
CUX1P39880 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC8.94□□□□□ -0.98
CUX1P39880 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC8.94□□□□□ -0.98
CUX1P39880 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
CUX1P39880 ZNF969P-201ENST00000510345 2341 ntBASIC8.94□□□□□ -0.98
CUX1P39880 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
CUX1P39880 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC8.93□□□□□ -0.98
CUX1P39880 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
CUX1P39880 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 UG0898H09-202ENST00000623646 7040 ntBASIC8.93□□□□□ -0.98
CUX1P39880 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 GJA6P-201ENST00000415117 1042 ntBASIC8.93□□□□□ -0.98
CUX1P39880 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC8.93□□□□□ -0.98
CUX1P39880 VDAC1P6-201ENST00000430062 855 ntBASIC8.93□□□□□ -0.98
CUX1P39880 AC093414.1-201ENST00000434712 514 ntBASIC8.93□□□□□ -0.98
CUX1P39880 KRT8P51-201ENST00000438938 274 ntBASIC8.93□□□□□ -0.98
CUX1P39880 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 TPT1P13-201ENST00000449760 499 ntBASIC8.93□□□□□ -0.98
CUX1P39880 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
CUX1P39880 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 PRELID3BP5-201ENST00000508612 460 ntBASIC8.93□□□□□ -0.98
CUX1P39880 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC8.93□□□□□ -0.98
CUX1P39880 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC8.93□□□□□ -0.98
CUX1P39880 AL356752.1-201ENST00000615844 593 ntBASIC8.93□□□□□ -0.98
CUX1P39880 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
CUX1P39880 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC8.93□□□□□ -0.98
CUX1P39880 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC8.92□□□□□ -0.98
CUX1P39880 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC8.92□□□□□ -0.98
CUX1P39880 RNA5SP428-201ENST00000365129 132 ntBASIC8.92□□□□□ -0.98
CUX1P39880 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC8.92□□□□□ -0.98
CUX1P39880 OR10T1P-201ENST00000424327 947 ntBASIC8.92□□□□□ -0.98
CUX1P39880 RPL7P56-201ENST00000429441 717 ntBASIC8.92□□□□□ -0.98
CUX1P39880 AC016712.1-201ENST00000431088 378 ntBASIC8.92□□□□□ -0.98
CUX1P39880 AC073264.2-201ENST00000448886 166 ntBASIC8.92□□□□□ -0.98
CUX1P39880 GCSHP4-201ENST00000538792 439 ntBASIC8.92□□□□□ -0.98
CUX1P39880 AC027667.1-201ENST00000545814 304 ntBASIC8.92□□□□□ -0.98
CUX1P39880 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC8.92□□□□□ -0.98
CUX1P39880 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC8.92□□□□□ -0.98
CUX1P39880 RPL27-207ENST00000590864 569 ntTSL 2 BASIC8.92□□□□□ -0.98
CUX1P39880 AC073869.10-201ENST00000642016 354 ntBASIC8.92□□□□□ -0.98
CUX1P39880 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC8.92□□□□□ -0.98
CUX1P39880 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
CUX1P39880 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
CUX1P39880 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
CUX1P39880 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC8.91□□□□□ -0.98
CUX1P39880 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC8.91□□□□□ -0.98
CUX1P39880 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC8.91□□□□□ -0.98
CUX1P39880 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX1P39880 AC092905.1-201ENST00000467527 949 ntBASIC8.91□□□□□ -0.98
CUX1P39880 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC8.91□□□□□ -0.98
CUX1P39880 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX1P39880 MIR5096-201ENST00000583713 70 ntBASIC8.91□□□□□ -0.98
CUX1P39880 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC8.91□□□□□ -0.98
CUX1P39880 AL353729.2-201ENST00000605859 1249 ntBASIC8.91□□□□□ -0.98
CUX1P39880 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX1P39880 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX1P39880 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
CUX1P39880 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CUX1P39880 AC010132.2-201ENST00000295493 1043 ntBASIC8.9□□□□□ -0.98
CUX1P39880 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC8.9□□□□□ -0.98
CUX1P39880 AL606490.8-201ENST00000441624 319 ntBASIC8.9□□□□□ -0.98
CUX1P39880 IGBP1P3-201ENST00000447449 1000 ntBASIC8.9□□□□□ -0.98
CUX1P39880 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC8.9□□□□□ -0.98
CUX1P39880 SNORD125-201ENST00000459538 96 ntBASIC8.9□□□□□ -0.98
CUX1P39880 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC8.9□□□□□ -0.98
CUX1P39880 RAB9BP1-201ENST00000519581 626 ntBASIC8.9□□□□□ -0.98
CUX1P39880 UBE2FP2-201ENST00000566646 462 ntBASIC8.9□□□□□ -0.98
CUX1P39880 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC8.9□□□□□ -0.98
CUX1P39880 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CUX1P39880 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC8.9□□□□□ -0.98
CUX1P39880 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC8.9□□□□□ -0.98
CUX1P39880 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC8.9□□□□□ -0.98
CUX1P39880 SCIN-201ENST00000297029 9713 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CUX1P39880 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC8.9□□□□□ -0.99
CUX1P39880 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
CUX1P39880 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC8.9□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms