Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC025470.1-201ENST00000510053 2032 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SNX18P3-202ENST00000565670 1750 ntBASIC5.57□□□□□ -1.52
LHX3Q9UBR4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 SNORA51.1-201ENST00000363243 140 ntBASIC5.57□□□□□ -1.52
LHX3Q9UBR4 Z93019.1-201ENST00000416450 973 ntBASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 RPL7L1P4-201ENST00000513004 707 ntBASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 HNRNPCP1-201ENST00000556181 766 ntBASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
LHX3Q9UBR4 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AP000547.3-204ENST00000588548 2523 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC007159.1-201ENST00000566529 4706 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC092070.2-203ENST00000598377 3644 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 RN7SKP160-201ENST00000363804 340 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AL391361.1-201ENST00000405580 489 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC017078.1-201ENST00000416146 368 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 IGBP1P3-201ENST00000447449 1000 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC007386.1-201ENST00000455212 582 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 RN7SL51P-201ENST00000468230 285 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC108693.1-201ENST00000496068 432 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC021106.1-201ENST00000509020 1058 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 ATP5LP3-201ENST00000514223 304 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 RN7SKP99-201ENST00000517028 307 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC027026.1-201ENST00000532323 742 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 MIR3176-201ENST00000582210 90 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC022467.1-201ENST00000614738 749 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 MTCO1P11-201ENST00000429111 1528 ntBASIC5.56□□□□□ -1.52
LHX3Q9UBR4 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LHX3Q9UBR4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
LHX3Q9UBR4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms