Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL355377.1-201ENST00000621125 1653 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SMG1P5-202ENST00000529428 4219 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SMG1P2-201ENST00000566127 4221 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RNU6-244P-201ENST00000391028 104 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SKINT1L-201ENST00000401057 817 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RN7SKP188-201ENST00000410789 317 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RNU4-64P-201ENST00000410795 131 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 ZDHHC20P2-201ENST00000424108 429 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 HMGB3P10-201ENST00000434734 572 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 DNAJA1P5-201ENST00000440278 943 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 EXTL2P1-201ENST00000446218 416 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL139156.3-201ENST00000454802 394 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RBMY2HP-201ENST00000457961 720 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC063943.2-201ENST00000495697 534 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RPL19P11-201ENST00000495944 589 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 IGHV3-57-201ENST00000520143 280 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TPRXL-210ENST00000532753 478 ntTSL 4 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 OR4A6P-201ENST00000534364 970 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC024257.5-201ENST00000612739 531 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC015819.1-201ENST00000613588 663 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL162574.1-201ENST00000615702 950 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 OR8G7P-201ENST00000616658 848 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 U1.41-201ENST00000617626 165 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC018692.2-201ENST00000624130 348 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AC010401.2-201ENST00000575137 4934 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL513185.3-201ENST00000433335 1300 ntBASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.5□□□□□ -1.37
TRIM39Q9HCM9 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC111188.2-201ENST00000529697 1387 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 Y_RNA.169-201ENST00000363745 96 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL133260.1-201ENST00000405720 405 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 HMGB3P18-201ENST00000406327 590 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 TAF13P2-201ENST00000416876 286 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 TRGV6-201ENST00000417928 299 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 FAM183DP-201ENST00000421987 399 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 OR6K4P-201ENST00000423179 955 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL008629.1-201ENST00000438615 184 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL117351.1-201ENST00000438864 766 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AC092601.1-201ENST00000444526 383 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL020997.1-201ENST00000446554 349 ntBASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.49□□□□□ -1.37
TRIM39Q9HCM9 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms