Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC109780.1-201ENST00000451768 1344 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SETP15-201ENST00000412724 337 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AP000534.2-201ENST00000412729 568 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 NMD3P2-201ENST00000421815 761 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 PPIAP10-201ENST00000438675 458 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 RN7SL197P-201ENST00000466981 299 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 RPL5P22-201ENST00000480199 884 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 NDUFA5P12-201ENST00000503796 343 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LSM3P2-201ENST00000551246 273 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC024940.4-201ENST00000605507 246 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC116651.1-201ENST00000609724 556 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC021766.1-201ENST00000624404 741 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC005618.4-201ENST00000625053 554 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AL359091.1-201ENST00000449048 1734 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TRIM4Q9C037 AC024587.1-201ENST00000505925 2157 ntBASIC5.79□□□□□ -1.48
TRIM4Q9C037 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
TRIM4Q9C037 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC117409.1-201ENST00000470499 1310 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 RN7SKP160-201ENST00000363804 340 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 MIR143-201ENST00000385300 106 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 RNA5SP296-201ENST00000410523 111 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC006455.6-201ENST00000426192 893 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 PCBP2P1-201ENST00000437262 977 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 HIGD1AP16-201ENST00000450986 258 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 FTH1P2-201ENST00000466086 412 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 OR11I1P-201ENST00000486033 954 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 Y_RNA.710-201ENST00000516975 110 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AL390334.1-201ENST00000556395 450 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 MIR132-201ENST00000591554 101 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC068768.2-201ENST00000602352 343 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC007786.3-201ENST00000615154 596 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 AC083843.2-201ENST00000568248 6253 ntBASIC5.78□□□□□ -1.48
TRIM4Q9C037 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
TRIM4Q9C037 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.78□□□□□ -1.48
TRIM4Q9C037 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 212.6 ms