Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AL121886.1-201ENST00000358609 435 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RN7SKP187-201ENST00000365536 330 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC099535.1-201ENST00000408928 371 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC096921.1-201ENST00000411661 375 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 MTCO1P51-201ENST00000427672 1060 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RPL5P2-201ENST00000429598 854 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC126120.1-201ENST00000431082 470 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC108751.3-201ENST00000461814 1020 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RN7SL168P-201ENST00000463821 279 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC090142.2-201ENST00000483263 416 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RN7SL570P-201ENST00000484405 292 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 OR9N1P-201ENST00000491296 333 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RNU4-18P-201ENST00000516751 149 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 EIF4A2P5-201ENST00000529914 499 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC006512.2-201ENST00000543250 486 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 ADAM3B-201ENST00000569937 840 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 RNA5SP439-201ENST00000617595 124 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AL353796.1-201ENST00000561542 3241 ntBASIC5.68□□□□□ -1.5
VPS39Q96JC1 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.68□□□□□ -1.5
VPS39Q96JC1 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VPS39Q96JC1 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC093849.1-201ENST00000563631 2209 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC003985.2-201ENST00000562268 1669 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC092681.1-201ENST00000297369 291 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 RN7SKP145-201ENST00000363291 303 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 MRPL53P1-201ENST00000414323 319 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 VN1R3-201ENST00000418822 919 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 PSAT1P4-201ENST00000466500 526 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 ATP5LP5-201ENST00000483050 299 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC073610.1-201ENST00000489971 396 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 LSM3P4-201ENST00000502948 309 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC024405.1-201ENST00000532521 1042 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC018552.1-201ENST00000562099 811 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AGGF1P7-201ENST00000562369 913 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC122134.1-201ENST00000565664 1104 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 MIR4675-201ENST00000577898 77 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC007786.3-201ENST00000615154 596 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 MIR6133-201ENST00000617057 108 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AC022919.1-201ENST00000624979 626 ntBASIC5.67□□□□□ -1.5
VPS39Q96JC1 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms