Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
USP39Q53GS9 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC009779.8-201ENST00000641684 4384 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 SNORD116-4-201ENST00000384733 96 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AL138880.1-201ENST00000405824 642 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 Z68694.1-201ENST00000413929 841 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 HYALP1-201ENST00000417674 1279 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 CDY8P-201ENST00000428380 1279 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AL353662.1-201ENST00000439099 327 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 MTND2P20-201ENST00000440805 661 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 CDY20P-201ENST00000447528 1279 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AL133351.3-201ENST00000454998 193 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 RN7SL326P-201ENST00000477493 296 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC022415.1-202ENST00000486612 523 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 FTH1P8-201ENST00000498161 514 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 OR2A20P-203ENST00000498397 1268 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 PSMA2P2-201ENST00000504319 686 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 GOLGA5P1-201ENST00000507317 980 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 OR5H7P-201ENST00000514084 930 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.37□□□□□ -1.39
USP39Q53GS9 SNORD46.2-201ENST00000516021 102 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 RNU6-311P-201ENST00000516224 102 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AP003066.2-201ENST00000529375 555 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC027807.1-201ENST00000559921 996 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AL157899.1-201ENST00000604110 936 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 MIR6768-201ENST00000610734 72 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 AC090246.1-201ENST00000616499 426 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 AC009318.3-201ENST00000616916 503 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.37□□□□□ -1.39
USP39Q53GS9 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.37□□□□□ -1.39
USP39Q53GS9 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
USP39Q53GS9 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.37□□□□□ -1.39
USP39Q53GS9 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.37□□□□□ -1.39
USP39Q53GS9 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 CASC19-228ENST00000641414 1684 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.36□□□□□ -1.39
USP39Q53GS9 RNU1-46P-201ENST00000384425 164 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC022028.1-201ENST00000412054 408 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 KRR1P1-201ENST00000419430 803 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC017019.1-201ENST00000426129 261 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AL589823.1-201ENST00000429577 183 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 PRELID3BP10-201ENST00000431957 584 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 ELOCP30-201ENST00000447108 299 ntBASIC6.36□□□□□ -1.39
USP39Q53GS9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC6.36□□□□□ -1.39
USP39Q53GS9 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC6.36□□□□□ -1.39
USP39Q53GS9 AC010486.2-201ENST00000505572 483 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 220.5 ms