Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC018809.2-201ENST00000602436 3823 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RN7SKP149-201ENST00000363008 344 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC068538.1-201ENST00000376856 336 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RN7SKP126-201ENST00000411143 300 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RPSAP35-201ENST00000413753 818 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC092651.1-201ENST00000426110 312 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AL356981.1-201ENST00000454879 684 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RPS23P2-201ENST00000463671 415 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RN7SL385P-201ENST00000468873 276 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC068831.8-201ENST00000620171 435 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RNA5SP455-201ENST00000365190 119 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 MIR192-201ENST00000384915 110 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RPL23AP17-201ENST00000401064 499 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 KRT8P51-201ENST00000438938 274 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 NANOGP9-201ENST00000439890 892 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RN7SL817P-201ENST00000480777 288 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 RPL23AP72-201ENST00000492447 435 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC134698.5-201ENST00000519444 336 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 OR5AM1P-201ENST00000532136 1032 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC007346.2-201ENST00000564816 892 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC018558.5-201ENST00000565840 952 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC093799.2-201ENST00000610062 578 ntBASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CCDC88AQ3V6T2 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AL162456.1-201ENST00000634535 2006 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 NPM1P40-201ENST00000412758 733 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 P2RY10P2-201ENST00000416730 913 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 OR10T1P-201ENST00000424327 947 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 USP24P1-201ENST00000433802 779 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 RHOT1P3-201ENST00000436571 331 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC073648.4-201ENST00000442655 781 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC009220.1-201ENST00000451614 275 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC020898.1-201ENST00000474167 787 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 OR7H2P-201ENST00000513483 306 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC009962.1-201ENST00000567327 3813 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 PRELID3BP3-201ENST00000584963 545 ntBASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CCDC88AQ3V6T2 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC88AQ3V6T2 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
CCDC88AQ3V6T2 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.71□□□□□ -1.33
CCDC88AQ3V6T2 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.71□□□□□ -1.33
CCDC88AQ3V6T2 SNURFL-201ENST00000309296 343 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 U3.28-201ENST00000391249 210 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 GAPDHP15-201ENST00000398586 975 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 AC079080.1-201ENST00000479841 822 ntBASIC6.71□□□□□ -1.34
CCDC88AQ3V6T2 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms