Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DEFB109A-201ENST00000482450 265 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.24□□□□□ -1.57
FOXA1P55317 NANOGNBP2-201ENST00000544753 553 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.24□□□□□ -1.57
FOXA1P55317 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC012616.1-201ENST00000600294 197 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC092944.2-201ENST00000605443 889 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 AL365181.4-201ENST00000609800 547 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 MIR6071-201ENST00000616741 78 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 MIR193BHG-214ENST00000641765 509 ntBASIC5.24□□□□□ -1.57
FOXA1P55317 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
FOXA1P55317 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
FOXA1P55317 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
FOXA1P55317 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.23□□□□□ -1.57
FOXA1P55317 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
FOXA1P55317 RN7SKP187-201ENST00000365536 330 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
FOXA1P55317 RPL12P9-201ENST00000412942 488 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC093155.2-201ENST00000420734 937 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.23□□□□□ -1.57
FOXA1P55317 FMO7P-201ENST00000436045 768 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 AL450996.1-201ENST00000445574 1202 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 EEF1B2P6-201ENST00000445713 673 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 LRRC37A14P-201ENST00000452297 462 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 RN7SL72P-201ENST00000460697 269 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC016559.2-201ENST00000510759 359 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 IGKV2-4-201ENST00000523070 340 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC005363.1-201ENST00000530779 351 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 MTCYBP13-201ENST00000578634 1093 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AP001496.3-201ENST00000580230 913 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.23□□□□□ -1.57
FOXA1P55317 AL138895.2-201ENST00000603019 178 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 AC009120.7-201ENST00000623452 780 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
FOXA1P55317 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.23□□□□□ -1.57
FOXA1P55317 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
FOXA1P55317 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
FOXA1P55317 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
FOXA1P55317 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXA1P55317 RN7SKP28-201ENST00000364770 305 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
FOXA1P55317 RAB5CP1-201ENST00000395972 580 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 NPM1P37-201ENST00000403105 874 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 GAPDHP42-201ENST00000406848 981 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 GABARAPL3-201ENST00000412799 354 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXA1P55317 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.22□□□□□ -1.57
FOXA1P55317 RN7SL168P-201ENST00000463821 279 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXA1P55317 AC092754.1-201ENST00000472975 479 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 RPS12P31-201ENST00000491419 398 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC5.22□□□□□ -1.57
FOXA1P55317 RNA5SP230-201ENST00000517039 122 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.22□□□□□ -1.57
FOXA1P55317 AP004607.2-201ENST00000533949 322 ntBASIC5.22□□□□□ -1.57
FOXA1P55317 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.22□□□□□ -1.57
FOXA1P55317 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
FOXA1P55317 IGBP1P1-201ENST00000554337 1009 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms