Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC073310.1-201ENST00000423226 1033 ntBASIC6.29□□□□□ -1.4
COPB1P53618 AL445528.1-201ENST00000426330 420 ntBASIC6.29□□□□□ -1.4
COPB1P53618 MTND4LP7-201ENST00000431728 294 ntBASIC6.29□□□□□ -1.4
COPB1P53618 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.29□□□□□ -1.4
COPB1P53618 NPM1P18-201ENST00000434232 732 ntBASIC6.29□□□□□ -1.4
COPB1P53618 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.29□□□□□ -1.4
COPB1P53618 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.29□□□□□ -1.4
COPB1P53618 RPL5P7-201ENST00000444235 813 ntBASIC6.29□□□□□ -1.4
COPB1P53618 OR52I1-201ENST00000450052 1050 ntBASIC6.29□□□□□ -1.4
COPB1P53618 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 RPS17P5-201ENST00000498293 408 ntBASIC6.29□□□□□ -1.4
COPB1P53618 AC090568.1-201ENST00000509499 856 ntBASIC6.29□□□□□ -1.4
COPB1P53618 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
COPB1P53618 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.29□□□□□ -1.4
COPB1P53618 IGLV3-30-201ENST00000524362 298 ntBASIC6.29□□□□□ -1.4
COPB1P53618 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.29□□□□□ -1.4
COPB1P53618 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 AL845552.1-201ENST00000556820 323 ntBASIC6.29□□□□□ -1.4
COPB1P53618 OR1E3-201ENST00000575608 948 ntBASIC6.29□□□□□ -1.4
COPB1P53618 DHFRP1-201ENST00000579682 559 ntBASIC6.29□□□□□ -1.4
COPB1P53618 MIR6133-201ENST00000617057 108 ntBASIC6.29□□□□□ -1.4
COPB1P53618 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.29□□□□□ -1.4
COPB1P53618 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.29□□□□□ -1.4
COPB1P53618 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.29□□□□□ -1.4
COPB1P53618 AC025262.3-201ENST00000623666 360 ntBASIC6.29□□□□□ -1.4
COPB1P53618 AL034546.1-201ENST00000623740 3693 ntBASIC6.29□□□□□ -1.4
COPB1P53618 AC010872.1-201ENST00000624225 675 ntBASIC6.29□□□□□ -1.4
COPB1P53618 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.29□□□□□ -1.4
COPB1P53618 AC132825.8-201ENST00000640783 297 ntBASIC6.29□□□□□ -1.4
COPB1P53618 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
COPB1P53618 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COPB1P53618 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
COPB1P53618 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.29□□□□□ -1.4
COPB1P53618 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 MTND4P9-201ENST00000507819 1346 ntBASIC6.28□□□□□ -1.4
COPB1P53618 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 RNFT1P3-201ENST00000340898 1052 ntBASIC6.28□□□□□ -1.4
COPB1P53618 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 RN7SKP29-201ENST00000410957 272 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 EEF1B2P8-201ENST00000414101 671 ntBASIC6.28□□□□□ -1.4
COPB1P53618 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 NPM1P25-201ENST00000429734 854 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AL389925.1-201ENST00000432257 728 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC018638.3-201ENST00000461273 132 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.28□□□□□ -1.4
COPB1P53618 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 AC139365.2-201ENST00000517972 253 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC005363.1-201ENST00000530779 351 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC6.28□□□□□ -1.4
COPB1P53618 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC6.28□□□□□ -1.4
COPB1P53618 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 PPATP2-201ENST00000605635 508 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC007786.3-201ENST00000615154 596 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC026367.3-201ENST00000619032 590 ntBASIC6.28□□□□□ -1.4
COPB1P53618 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.28□□□□□ -1.4
COPB1P53618 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.28□□□□□ -1.4
COPB1P53618 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COPB1P53618 ADAM24P-201ENST00000398655 2101 ntBASIC6.28□□□□□ -1.4
COPB1P53618 THAP12P8-201ENST00000447914 2115 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC104964.3-201ENST00000606115 2860 ntBASIC6.28□□□□□ -1.4
COPB1P53618 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.27□□□□□ -1.41
COPB1P53618 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COPB1P53618 HSPD1P7-201ENST00000447985 1686 ntBASIC6.27□□□□□ -1.41
COPB1P53618 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COPB1P53618 BCORP1-203ENST00000513194 5093 ntBASIC6.27□□□□□ -1.41
COPB1P53618 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.27□□□□□ -1.41
COPB1P53618 RNU6-386P-201ENST00000362650 107 ntBASIC6.27□□□□□ -1.41
COPB1P53618 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.27□□□□□ -1.41
COPB1P53618 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
COPB1P53618 AC005042.1-201ENST00000393397 800 ntBASIC6.27□□□□□ -1.41
COPB1P53618 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COPB1P53618 AL357752.1-201ENST00000412817 349 ntBASIC6.27□□□□□ -1.41
COPB1P53618 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.27□□□□□ -1.41
COPB1P53618 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms