Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL356981.1-201ENST00000454879 684 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 NDUFA5P9-201ENST00000472609 340 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC004980.4-201ENST00000513375 203 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 GAPDHP62-201ENST00000515313 990 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.82□□□□□ -1.48
COL4A4P53420 AC068790.4-201ENST00000602474 263 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 AC093388.1-201ENST00000609166 430 ntBASIC5.82□□□□□ -1.48
COL4A4P53420 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL4A4P53420 LPP-208ENST00000448637 5835 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
COL4A4P53420 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC5.81□□□□□ -1.48
COL4A4P53420 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.81□□□□□ -1.48
COL4A4P53420 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 DBIP1-201ENST00000401435 260 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.81□□□□□ -1.48
COL4A4P53420 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 MED28P3-201ENST00000444288 531 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 LINC02210-201ENST00000444561 288 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 AC092647.2-201ENST00000452998 253 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 AC009963.2-201ENST00000453431 138 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 ATP5LP5-201ENST00000483050 299 ntBASIC5.81□□□□□ -1.48
COL4A4P53420 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.81□□□□□ -1.48
COL4A4P53420 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.81□□□□□ -1.48
COL4A4P53420 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.81□□□□□ -1.48
COL4A4P53420 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.81□□□□□ -1.48
COL4A4P53420 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
COL4A4P53420 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL4A4P53420 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 OR4F13P-202ENST00000560066 2054 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.8□□□□□ -1.48
COL4A4P53420 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 RN7SKP149-201ENST00000363008 344 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 RNF10P1-201ENST00000418589 369 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 AC021876.1-201ENST00000425959 359 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 AL138878.2-201ENST00000440581 1241 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.8□□□□□ -1.48
COL4A4P53420 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.8□□□□□ -1.48
COL4A4P53420 AC073072.2-201ENST00000447425 348 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 MEMO1P4-201ENST00000453590 386 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 PMS2P3-207ENST00000529061 717 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 OR5AM1P-201ENST00000532136 1032 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.8□□□□□ -1.48
COL4A4P53420 OR11H3P-201ENST00000554547 982 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 AC095055.1-201ENST00000603472 1113 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 AC135068.5-201ENST00000624197 983 ntBASIC5.8□□□□□ -1.48
COL4A4P53420 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL4A4P53420 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.8□□□□□ -1.48
COL4A4P53420 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL4A4P53420 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.79□□□□□ -1.48
COL4A4P53420 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.79□□□□□ -1.48
COL4A4P53420 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL4A4P53420 RN7SKP185-201ENST00000362813 326 ntBASIC5.79□□□□□ -1.48
COL4A4P53420 RNA5SP123-201ENST00000363244 119 ntBASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms