Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 AL132640.2-201ENST00000559968 1698 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 AC063976.2-201ENST00000425667 3556 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.55□□□□□ -1.36
BRCA1P38398 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC012519.1-201ENST00000424588 610 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 AC012512.1-201ENST00000446594 718 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC093720.1-201ENST00000505681 714 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC6.55□□□□□ -1.36
BRCA1P38398 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC012414.7-202ENST00000622705 1090 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
BRCA1P38398 AC013268.3-201ENST00000262716 2324 ntBASIC6.55□□□□□ -1.36
BRCA1P38398 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
BRCA1P38398 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 SDAD1P1-202ENST00000524156 2051 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.54□□□□□ -1.36
BRCA1P38398 U3.3-201ENST00000362986 216 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AP002530.1-201ENST00000405705 684 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AL353626.3-201ENST00000413399 657 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 CHIAP3-201ENST00000423668 1133 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 GTF2IP2-201ENST00000424290 697 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AC007537.2-201ENST00000472093 511 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.54□□□□□ -1.36
BRCA1P38398 GAPDHP56-201ENST00000506031 988 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 IGKV1-32-201ENST00000519290 311 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.54□□□□□ -1.36
BRCA1P38398 YWHABP2-201ENST00000540201 713 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AC137627.1-201ENST00000545761 289 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.54□□□□□ -1.36
BRCA1P38398 MIR1254-2-201ENST00000579553 63 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 AC016717.3-201ENST00000624730 554 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 AC006600.2-201ENST00000624834 2506 ntBASIC6.54□□□□□ -1.36
BRCA1P38398 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
BRCA1P38398 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
BRCA1P38398 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
BRCA1P38398 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 AC083899.1-201ENST00000454465 3819 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 AC007346.2-201ENST00000564816 892 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AC103792.1-201ENST00000603591 919 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
BRCA1P38398 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.53□□□□□ -1.36
BRCA1P38398 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 SPATA31C1-201ENST00000420021 3895 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 BX284613.1-201ENST00000452221 1641 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.53□□□□□ -1.36
BRCA1P38398 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.53□□□□□ -1.36
BRCA1P38398 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
BRCA1P38398 AC068287.1-201ENST00000430283 295 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC6.53□□□□□ -1.36
BRCA1P38398 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.53□□□□□ -1.36
BRCA1P38398 OSTCP1-201ENST00000455507 450 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC6.53□□□□□ -1.36
BRCA1P38398 COX6B1P5-201ENST00000509843 249 ntBASIC6.53□□□□□ -1.36
BRCA1P38398 AC026402.1-201ENST00000513642 170 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms