Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC078899.1-201ENST00000521432 1185 ntBASIC6.76□□□□□ -1.33
SMARCA1P28370 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC6.76□□□□□ -1.33
SMARCA1P28370 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.76□□□□□ -1.33
SMARCA1P28370 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SMARCA1P28370 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC6.76□□□□□ -1.33
SMARCA1P28370 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.76□□□□□ -1.33
SMARCA1P28370 AC023158.1-201ENST00000561632 1025 ntBASIC6.76□□□□□ -1.33
SMARCA1P28370 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC6.76□□□□□ -1.33
SMARCA1P28370 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMARCA1P28370 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMARCA1P28370 AC245884.10-201ENST00000597355 337 ntBASIC6.76□□□□□ -1.33
SMARCA1P28370 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.76□□□□□ -1.33
SMARCA1P28370 AP003499.2-201ENST00000624100 483 ntBASIC6.76□□□□□ -1.33
SMARCA1P28370 OR11H2-202ENST00000641517 1085 ntBASIC6.76□□□□□ -1.33
SMARCA1P28370 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.76□□□□□ -1.33
SMARCA1P28370 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SMARCA1P28370 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SMARCA1P28370 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMARCA1P28370 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SMARCA1P28370 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SMARCA1P28370 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
SMARCA1P28370 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.75□□□□□ -1.33
SMARCA1P28370 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
SMARCA1P28370 SNORD51.1-201ENST00000365405 77 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 AL035405.1-201ENST00000400795 710 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 SNORA11.3-201ENST00000408471 128 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 MRPL53P1-201ENST00000414323 319 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 AC073310.1-201ENST00000423226 1033 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 NPM1P26-201ENST00000426339 738 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC126120.1-201ENST00000431082 470 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 RNU1-88P-201ENST00000459274 128 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 ATP5G1P3-201ENST00000463301 410 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC012123.2-201ENST00000485809 248 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 NENFP3-201ENST00000503735 313 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 TPT1P8-201ENST00000510120 555 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC074255.1-201ENST00000511259 501 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC110760.3-202ENST00000515177 371 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 RNU6-1102P-201ENST00000516149 96 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 TRIM51DP-201ENST00000529746 596 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC090424.1-201ENST00000535243 736 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 MTND1P8-201ENST00000571424 950 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC027216.1-201ENST00000577726 685 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 QTRT1P1-201ENST00000604344 1078 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 NANOGP3-201ENST00000605855 286 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC6.75□□□□□ -1.33
SMARCA1P28370 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 SNORA11.6-201ENST00000619030 128 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 AC123769.1-201ENST00000530992 3192 ntBASIC6.75□□□□□ -1.33
SMARCA1P28370 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.75□□□□□ -1.33
SMARCA1P28370 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMARCA1P28370 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 MIR375-201ENST00000362103 64 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC245060.4-201ENST00000413293 1121 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 DPPA2P2-201ENST00000418220 897 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms