Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 FAM27E4-201ENST00000605259 342 ntBASIC4.29□□□□□ -1.72
HLA-DMBP28068 AL136131.3-201ENST00000607600 188 ntBASIC4.29□□□□□ -1.72
HLA-DMBP28068 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.29□□□□□ -1.72
HLA-DMBP28068 MIR6133-201ENST00000617057 108 ntBASIC4.29□□□□□ -1.72
HLA-DMBP28068 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HLA-DMBP28068 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HLA-DMBP28068 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HLA-DMBP28068 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HLA-DMBP28068 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 EEF1A1P14-201ENST00000421195 1376 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 PDZK1P1-202ENST00000425209 1350 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC007938.2-201ENST00000604666 2634 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC019072.1-201ENST00000604535 1551 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL159987.1-201ENST00000347911 293 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL133482.1-201ENST00000415988 498 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 BX284632.2-201ENST00000421091 399 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL035660.1-201ENST00000422041 222 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 TMEM183AP1-205ENST00000432739 290 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 NDUFS5P5-201ENST00000437256 321 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 VN1R110P-201ENST00000438988 971 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL512605.1-202ENST00000441919 381 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC073109.1-201ENST00000445066 978 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL359955.2-201ENST00000445380 353 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 RN7SL197P-201ENST00000466981 299 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL122020.1-201ENST00000472287 459 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 RPS17P5-201ENST00000498293 408 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 PSMA2P2-201ENST00000504319 686 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 SNORD46.2-201ENST00000516021 102 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AC079600.1-201ENST00000550326 297 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AGGF1P7-201ENST00000562369 913 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL357153.4-201ENST00000620487 1016 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 5S_rRNA.28-201ENST00000638107 119 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 PWAR1-201ENST00000624188 2414 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 AL138820.1-201ENST00000617901 5305 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 HSPD1P7-201ENST00000447985 1686 ntBASIC4.28□□□□□ -1.72
HLA-DMBP28068 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HLA-DMBP28068 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.28□□□□□ -1.72
HLA-DMBP28068 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HLA-DMBP28068 OR52B3P-201ENST00000314715 928 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 RNA5SP284-201ENST00000384547 118 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 AL031985.1-201ENST00000392713 418 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
HLA-DMBP28068 RPSAP35-201ENST00000413753 818 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 AL136231.1-201ENST00000429407 730 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 NPM1P18-201ENST00000434232 732 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 PCBP2P1-201ENST00000437262 977 ntBASIC4.27□□□□□ -1.73
HLA-DMBP28068 RPL5P25-201ENST00000441148 775 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms