Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 NLRP3P1-201ENST00000622303 1785 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.37□□□□□ -1.55
CLDN9O95484 ICE2P1-201ENST00000512800 1849 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.37□□□□□ -1.55
CLDN9O95484 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 AL022311.1-201ENST00000623726 19416 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 OR52B3P-201ENST00000314715 928 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CLDN9O95484 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
CLDN9O95484 RNA5SP394-201ENST00000364216 119 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 RNA5SP131-201ENST00000365452 119 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 HMGB1P20-201ENST00000402555 677 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 AC007161.1-204ENST00000423039 460 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 AC113412.1-201ENST00000425840 504 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 AC009784.1-201ENST00000426484 460 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.37□□□□□ -1.55
CLDN9O95484 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 RNU6-615P-201ENST00000516065 106 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.37□□□□□ -1.55
CLDN9O95484 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.37□□□□□ -1.55
CLDN9O95484 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.37□□□□□ -1.55
CLDN9O95484 AC005726.4-201ENST00000582858 458 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 AC025574.2-201ENST00000615621 514 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 MIR1910-201ENST00000636955 80 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.37□□□□□ -1.55
CLDN9O95484 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 AC106872.5-201ENST00000508856 1416 ntBASIC5.37□□□□□ -1.55
CLDN9O95484 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.37□□□□□ -1.55
CLDN9O95484 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CLDN9O95484 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CLDN9O95484 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
CLDN9O95484 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 AC016745.2-201ENST00000608834 3443 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 RNA5SP122-201ENST00000384457 108 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 RPSAP35-201ENST00000413753 818 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 IPPKP1-201ENST00000422501 768 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 MRPS21P2-201ENST00000424704 264 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.36□□□□□ -1.55
CLDN9O95484 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.36□□□□□ -1.55
CLDN9O95484 RPS10P18-201ENST00000442662 495 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.36□□□□□ -1.55
CLDN9O95484 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AC105420.1-201ENST00000504389 582 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 NPM1P21-201ENST00000513394 762 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 OR4A43P-201ENST00000532938 908 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.36□□□□□ -1.55
CLDN9O95484 AC079600.1-201ENST00000550326 297 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 NDUFA5P11-201ENST00000567995 343 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 MIR7853-201ENST00000584820 132 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AC108865.2-201ENST00000606881 432 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 uc_338.7-201ENST00000621834 124 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AP001962.1-201ENST00000624114 559 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AC009950.2-201ENST00000636548 183 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.36□□□□□ -1.55
CLDN9O95484 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CLDN9O95484 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 SRRM1P3-201ENST00000426911 2678 ntBASIC5.36□□□□□ -1.55
CLDN9O95484 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CLDN9O95484 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CLDN9O95484 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CLDN9O95484 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
CLDN9O95484 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms