Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC023490.2-201ENST00000359859 470 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 RNA5SP284-201ENST00000384547 118 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 RPL23AP19-201ENST00000436229 369 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AP004609.2-201ENST00000532177 190 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 OFD1P17-201ENST00000437639 3018 ntBASIC5.86□□□□□ -1.47
SIX2Q9NPC8 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
SIX2Q9NPC8 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 MIR133A2-201ENST00000347538 102 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RNA5SP241-201ENST00000391326 114 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 HYALP1-201ENST00000417674 1279 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC017019.1-201ENST00000426129 261 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RPL5P25-201ENST00000441148 775 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC064862.4-201ENST00000442180 334 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AP000281.1-201ENST00000444036 316 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RPL15P21-201ENST00000495592 567 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC074087.1-201ENST00000512059 724 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AL049872.1-201ENST00000556323 322 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RBM22P12-201ENST00000567098 1255 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RN7SL290P-201ENST00000578661 300 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC132068.1-201ENST00000623805 459 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AC099654.6-201ENST00000636487 512 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 AL078621.3-201ENST00000623707 2042 ntBASIC5.85□□□□□ -1.47
SIX2Q9NPC8 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SIX2Q9NPC8 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 DNM1P47-203ENST00000571780 12667 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SIX2Q9NPC8 RNA5SP234-201ENST00000363916 119 ntBASIC5.84□□□□□ -1.47
SIX2Q9NPC8 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms