Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 OR4A42P-201ENST00000531397 938 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 DPPA2P4-201ENST00000563717 878 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AL161912.3-201ENST00000605404 628 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC073575.2-201ENST00000614212 627 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 AC008115.3-201ENST00000614874 549 ntBASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.8□□□□□ -1.48
TM9SF3Q9HD45 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MIR105-2-201ENST00000385083 81 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MTND4LP21-201ENST00000415303 295 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 SPRYD7P1-201ENST00000443861 570 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC005297.1-201ENST00000444765 862 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC090602.1-201ENST00000469695 252 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RN7SL799P-201ENST00000475891 298 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RNA5SP34-201ENST00000516887 130 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MIR4260-201ENST00000583107 67 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MIR132-201ENST00000591554 101 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 AL021707.7-201ENST00000607991 416 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 MTCO1P15-201ENST00000529569 1526 ntBASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
TM9SF3Q9HD45 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC092451.3-201ENST00000625067 1343 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 SNORA79B-201ENST00000410557 148 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 MYL6P5-201ENST00000412707 459 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 CLUHP1-201ENST00000435012 1190 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 FMO7P-201ENST00000436045 768 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 SNRPFP2-201ENST00000440710 251 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC239798.3-201ENST00000454459 408 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 RN7SL515P-201ENST00000463999 297 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 BX510359.5-201ENST00000515651 304 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 SCARNA6.1-201ENST00000516989 238 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC136777.2-201ENST00000522979 358 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AL049779.3-201ENST00000557141 606 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AP001357.1-201ENST00000586304 1053 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC211433.2-201ENST00000608433 387 ntBASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.78□□□□□ -1.48
TM9SF3Q9HD45 AC007683.2-201ENST00000624681 714 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms